Ryan Stocks

dblp:304/6009 · DBLP profile ↗
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2ranked-venue papers
1as first author
2since 2021 · last 2024
0000-0003-0654-9670ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 2 · 1 first-author · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Computer architecture, parallel and distributed computing, and storage systems
2 papers
High-performance computing · 74% GPUs and heterogeneous computing · 21% Parallel and multicore computing · 4%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Computational science and engineering · 100%

Topics — the 7 heaviest of 8, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
High-performance computing
scientific computing systems
1.322024
Breaking the Million-Electron and 1 EFLOP/s Barriers: Biomolecular-Scale Ab Initio Molecular Dynamics Using MP2 Potentials · SC 2024
Enabling large-scale correlated electronic structure calculations: scaling the RI-MP2 method on summit · SC 2021
Computational science and engineering › computational chemistry
ab initio molecular dynamics
0.812024
Breaking the Million-Electron and 1 EFLOP/s Barriers: Biomolecular-Scale Ab Initio Molecular Dynamics Using MP2 Potentials · SC 2024
Computational science and engineering › computational chemistry › molecular simulation
molecular dynamics
0.812024
Breaking the Million-Electron and 1 EFLOP/s Barriers: Biomolecular-Scale Ab Initio Molecular Dynamics Using MP2 Potentials · SC 2024
High-performance computing › scientific computing systems
biomolecular simulation
0.812024
Breaking the Million-Electron and 1 EFLOP/s Barriers: Biomolecular-Scale Ab Initio Molecular Dynamics Using MP2 Potentials · SC 2024
GPUs and heterogeneous computing › multi-GPU computing
distributed GPU computing
0.512021
Enabling large-scale correlated electronic structure calculations: scaling the RI-MP2 method on summit · SC 2021
High-performance computing › scientific computing systems
quantum chemistry simulation
0.512021
Enabling large-scale correlated electronic structure calculations: scaling the RI-MP2 method on summit · SC 2021
GPUs and heterogeneous computing
GPU-accelerated scientific computing
0.212024
Breaking the Million-Electron and 1 EFLOP/s Barriers: Biomolecular-Scale Ab Initio Molecular Dynamics Using MP2 Potentials · SC 2024

Methods — techniques the papers use, named apart from their topics

molecular fragmentation · 2.0resolution-of-identity approximation · 1.5asynchronous time stepping · 1.5MP2 perturbation theory · 1.5many-GPU algorithm · 0.5RI-MP2 · 0.5
YearPublicationVenuePosition
2024 Breaking the Million-Electron and 1 EFLOP/s Barriers: Biomolecular-Scale Ab Initio Molecular Dynamics Using MP2 Potentials
abstract
The accurate simulation of complex biochemical phenomena has historically been hampered by the computational requirements of high-fidelity molecular-modeling techniques. Quantum mechanical methods, such as ab initio wave-function (WF) theory, deliver the desired accuracy, but have impractical scaling for modeling biosystems with thousands of atoms. Combining molecular fragmentation with MP2 perturbation theory, this study presents an innovative approach that enables biomolecular-scale ab initio molecular dynamics (AIMD) simulations at WF theory level. Leveraging the resolution-of-the-identity approximation for Hartree-Fock and MP2 gradients, our approach eliminates computationally intensive four-center integrals and their gradients, while achieving near-peak performance on modern GPU architectures. The introduction of asynchronous time steps minimizes time step latency, overlapping computational phases and effectively mitigating load imbalances. Utilizing up to $\mathbf{9, 4 0 0}$ nodes of Frontier and achieving $\mathbf{5 9 \%}$ (1006.7 PFLOP/s) of its double-precision floating-point peak, our method enables us to break the million-electron and $1 \mathrm{EFLOP} / \mathrm{s}$ barriers for AIMD simulations with quantum accuracy.
Ryan Stocks, Jorge L. Galvez Vallejo, Fiona C. Y. Yu, Calum Snowdon, Elise Palethorpe, Jakub Kurzak, Dmytro Bykov, Giuseppe M. J. Barca
SC1
2021 Enabling large-scale correlated electronic structure calculations: scaling the RI-MP2 method on summit
abstract
Second-order Møller-Plesset perturbation theory using the Resolution-of-the-Identity approximation (RI-MP2) is a state-of-the-art approach to accurately estimate many-body electronic correlation effects. This is critical for predicting the physicochemical properties of complex molecular systems; however, the scale of these calculations is limited by their extremely high computational cost. In this paper, a novel many-GPU algorithm and implementation of a molecular-fragmentation-based RI-MP2 method are presented that enable correlated calculations on over 180,000 electrons and 45,000 atoms using up to the entire Summit supercomputer in 12 minutes. The implementation demonstrates remarkable speedups with respect to other current GPU and CPU codes, excellent strong scalability on Summit achieving 89.1% parallel efficiency on 4600 nodes, and shows nearly-ideal weak scaling up to 612 nodes. This work makes feasible ab initio correlated quantum chemistry calculations on significantly larger molecular scales than before on both large supercomputing systems and on commodity clusters, with a potential for major impact on progress in chemical, physical, biological and engineering sciences.
Giuseppe M. J. Barca, Jorge L. Galvez Vallejo, David Poole 0001, Melisa Alkan, Ryan Stocks, Alistair P. Rendell, Mark S. Gordon
SC5