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Ignacio Eguinoa

dblp:305/7025 · DBLP profile ↗
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2ranked-venue papers
0as first author
2since 2021 · last 2022
0000-0002-6190-122XORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
genomics		 0.512021
A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive · Bioinform. 2021
Bioinformatics and computational biology › genomics › viral genomics
SARS-CoV-2 genome analysis		 0.112021
A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

galaxy workflow · 0.5docker · 0.5
YearPublicationVenuePosition
2022 Ten simple rules for making a software tool workflow-ready
Paul Brack, Peter Crowther, Stian Soiland-Reyes, Stuart Owen, Douglas Lowe, Alan R. Williams, Quentin Groom, Mathias Dillen, Frederik Coppens, Björn A. Grüning, Ignacio Eguinoa, Philip Ewels, Carole A. Goble
 PLoS Comput. Biol.11
2021 A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive
abstract
SUMMARY: Many aspects of the global response to the COVID-19 pandemic are enabled by the fast and open publication of SARS-CoV-2 genetic sequence data. The European Nucleotide Archive (ENA) is the European recommended open repository for genetic sequences. In this work, we present a tool for submitting raw sequencing reads of SARS-CoV-2 to ENA. The tool features a single-step submission process, a graphical user interface, tabular-formatted metadata and the possibility to remove human reads prior to submission. A Galaxy wrap of the tool allows users with little or no bioinformatics knowledge to do bulk sequencing read submissions. The tool is also packed in a Docker container to ease deployment. AVAILABILITY AND IMPLEMENTATION: CLI ENA upload tool is available at github.com/usegalaxy-eu/ena-upload-cli (DOI 10.5281/zenodo.4537621); Galaxy ENA upload tool at toolshed.g2.bx.psu.edu/view/iuc/ena_upload/382518f24d6d and github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload (development); and ENA upload Galaxy container at github.com/ELIXIR-Belgium/ena-upload-container (DOI 10.5281/zenodo.4730785).
Miguel Roncoroni, Bert Droesbeke, Ignacio Eguinoa, Kim De Ruyck, Flora D'anna, Dilmurat Yusuf, Björn A. Grüning, Rolf Backofen, Frederik Coppens
 Bioinform.3