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Johanne M. Justesen

dblp:309/3840 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2021
0000-0002-0484-8522ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › survival analysis
cox regression
0.512021
Survival analysis on rare events using group-regularized multi-response Cox regression · Bioinform. 2021
Bioinformatics and computational biology
survival analysis
0.512021
Survival analysis on rare events using group-regularized multi-response Cox regression · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

screening · 0.5proximal gradient optimization · 0.5group-regularized regression · 0.5
YearPublicationVenuePosition
2021 Survival analysis on rare events using group-regularized multi-response Cox regression
abstract
MOTIVATION: The prediction performance of Cox proportional hazard model suffers when there are only few uncensored events in the training data. RESULTS: We propose a Sparse-Group regularized Cox regression method to improve the prediction performance of large-scale and high-dimensional survival data with few observed events. Our approach is applicable when there is one or more other survival responses that 1. has a large number of observed events; 2. share a common set of associated predictors with the rare event response. This scenario is common in the UK Biobank dataset where records for a large number of common and less prevalent diseases of the same set of individuals are available. By analyzing these responses together, we hope to achieve higher prediction performance than when they are analyzed individually. To make this approach practical for large-scale data, we developed an accelerated proximal gradient optimization algorithm as well as a screening procedure inspired by Qian et al. AVAILABILITYANDIMPLEMENTATION: https://github.com/rivas-lab/multisnpnet-Cox.
Yosuke Tanigawa, Johanne M. Justesen, Trevor J. Hastie, Robert Tibshirani, Manuel A. Rivas
Bioinform.3