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David Sancho

dblp:31/7522 · DBLP profile ↗
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2ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 1Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › omics data analysis
cell-type deconvolution
0.812024
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks · Bioinform. 2024
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics
0.812024
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks · Bioinform. 2024

Methods — techniques the papers use, named apart from their topics

simulation of mixed profiles · 0.8fully connected neural network · 0.8
YearPublicationVenuePosition
2024 SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks
abstract
SUMMARY: Spatial transcriptomics has changed our way to study tissue structure and cellular organization. However, there are still limitations in its resolution, and most available platforms do not reach a single cell resolution. To address this issue, we introduce SpatialDDLS, a fast neural network-based algorithm for cell type deconvolution of spatial transcriptomics data. SpatialDDLS leverages single-cell RNA sequencing data to simulate mixed transcriptional profiles with predefined cellular composition, which are subsequently used to train a fully connected neural network to uncover cell type diversity within each spot. By comparing it with two state-of-the-art spatial deconvolution methods, we demonstrate that SpatialDDLS is an accurate and fast alternative to the available state-of-the art tools. AVAILABILITY AND IMPLEMENTATION: The R package SpatialDDLS is available via CRAN-The Comprehensive R Archive Network: https://CRAN.R-project.org/package=SpatialDDLS. A detailed manual of the main functionalities implemented in the package can be found at https://diegommcc.github.io/SpatialDDLS.
Diego Mañanes, Inés Rivero-García, Carlos Relaño, David Sancho, Daniel Jimenez-Carretero, Carlos Torroja Fungairino, Fátima Sánchez-Cabo
Bioinform.5
2012 Communication protocol for the Guardian system aimed at the protection of mistreated people
Dante I. Tapia, Ricardo S. Alonso, Óscar García, Fabio Guevara, David Sancho, José A. Pardo, Antonio Juan Sánchez, Juan M. Corchado
FUSION5