EDBT 2026 Demo / reviewers in the wild / expert
John Kalkhof
dblp:311/4341
· DBLP profile ↗
9ranked-venue papers
3as first author
9since 2021 · last 2026
0000-0001-7316-1903ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Graphics, computer vision, multimedia, augmented reality and games · 6 · 2 first-author · 6 since 2021Applied, interdisciplinary, general and emerging computing · 6 · 3 first-author · 6 since 2021Artificial intelligence and machine learning · 3 · 3 since 2021Human-computer interaction and ubiquitous computing · 1 · 1 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Extreme cardiac MRI analysis under respiratory motion: Results of the CMRxMotion challenge
Kang Wang 0017, Chen Qin, Zhang Shi, Haoran Wang 0009, Chen Chen 0042, Cheng Ouyang, Chengliang Dai, Yuanhan Mo, Chenchen Dai, Xutong Kuang, Ruizhe Li 0005, Xin Chen 0003, Xiuzheng Yue, Song Tian, Alejandro Mora-Rubio, Kumaradevan Punithakumar, Shizhan Gong, Qi Dou 0001, Sina Amirrajab, Yasmina Alkhalil, Cian M. Scannell, Lexiaozi Fan, Huili Yang, Xiaowu Sun, Rob J. van der Geest, Tewodros Weldebirhan Arega, Fabrice Mériaudeau, Caner Ozer, Amin Ranem, John Kalkhof, Ilkay Öksüz, Anirban Mukhopadhyay 0003, Abdul Qayyum 0002, Moona Mazher, Steven A. Niederer, Carles García-Cabrera, Eric Arazo Sanchez, Michal K. Grzeszczyk, Szymon Plotka, Wanqin Ma, Xiaomeng Li 0001, Rongjun Ge, Yongqing Kou, Xinrong Chen, He Wang 0016, Chengyan Wang, Wenjia Bai, Shuo Wang 0011 |
Medical Image Anal. | 31 |
| 2025 | MedSegDiffNCA: Diffusion Models With Neural Cellular Automata for Skin Lesion SegmentationabstractDenoising Diffusion Models (DDMs) are widely used for high-quality image generation and medical image segmentation but often rely on Unet-based architectures, leading to high computational overhead, especially with high-resolution images. This work proposes three NCA-based improvements for diffusion-based medical image segmentation. First, CBAMMedSegDiffNCA incorporates channel and spatial attention for improved segmentation. Second, Multi-MedSegDiffNCA uses a multilevel NCA framework to refine rough noise estimates generated by lower-level NCA models. Third, MultiCBAMMedSegDiffNCA combines these methods with a new RGB channel loss for semantic guidance. Evaluations on Lesion segmentation show that MultiCBAM-MedSegDiffNCA matches Unet-based model performance with a dice score of 87.84% while using 60-110 times fewer parameters and 5 times faster training, offering an efficient solution for low-resource medical settings. Avni Mittal, John Kalkhof, Anirban Mukhopadhyay 0003, Arnav Bhavsar |
CBMS | 2 |
| 2025 | Equitable Federated Learning with NCA
Nick Lemke, Mirko Konstantin, Henry John Krumb, John Kalkhof, Jonathan Stieber, Anirban Mukhopadhyay 0003 |
MICCAI (14) | 4 |
| 2025 | NCAdapt: Dynamic Adaptation with Domain-Specific Neural Cellular Automata for Continual Hippocampus SegmentationabstractContinual learning (CL) in medical imaging presents a unique challenge, requiring models to adapt to new domains while retaining previously acquired knowledge. We introduce NCAdapt, a Neural Cellular Automata (NCA) based method designed to address this challenge. NCAdapt features a domain-specific multi-head structure, integrating adaptable convolutional layers into the NCA backbone for each new domain encountered. After initial training, the NCA backbone is frozen, and only the newly added adaptable convolutional layers, consisting of 384 parameters, are trained along with domain-specific NCA convolutions. We evaluate NCAdapt on hippocampus segmentation tasks, benchmarking its performance against Lifelong nnU-Net and U-Net models with state-of-the-art (SOTA) CL methods. Our lightweight approach achieves SOTA performance, underscoring its effectiveness in addressing CL challenges in medical imaging. Upon acceptance, we will make our code base publicly accessible to support reproducibility and foster further advancements in medical CL. Amin Ranem, John Kalkhof, Anirban Mukhopadhyay 0003 |
WACV | 2 |
| 2025 | MED-NCA: Bio-inspired medical image segmentationabstractThe reliance on computationally intensive U-Net and Transformer architectures significantly limits their accessibility in low-resource environments, creating a technological divide that hinders global healthcare equity, especially in medical diagnostics and treatment planning. This divide is most pronounced in low- and middle-income countries, primary care facilities, and conflict zones. We introduced MED-NCA, Neural Cellular Automata (NCA) based segmentation models characterized by their low parameter count, robust performance, and inherent quality control mechanisms. These features drastically lower the barriers to high-quality medical image analysis in resource-constrained settings, allowing the models to run efficiently on hardware as minimal as a Raspberry Pi or a smartphone. Building upon the foundation laid by MED-NCA, this paper extends its validation across eight distinct anatomies, including the hippocampus and prostate (MRI, 3D), liver and spleen (CT, 3D), heart and lung (X-ray, 2D), breast tumor (Ultrasound, 2D), and skin lesion (Image, 2D). Our comprehensive evaluation demonstrates the broad applicability and effectiveness of MED-NCA in various medical imaging contexts, matching the performance of two magnitudes larger UNet models. Additionally, we introduce NCA-VIS, a visualization tool that gives insight into the inference process of MED-NCA and allows users to test its robustness by applying various artifacts. This combination of efficiency, broad applicability, and enhanced interpretability makes MED-NCA a transformative solution for medical image analysis, fostering greater global healthcare equity by making advanced diagnostics accessible in even the most resource-limited environments. • Introducing bio-inspired emergent systems for resilient medical image segmentation. • MED-NCA needs only 10k–70k parameters for high-quality medical image segmentation. • MED-NCA matches the average Dice accuracy of UNet models 2–3 magnitudes larger. • NCAs enable unique insight into the inference process via their one-cell architecture. • NCA-VIS visualizes inference and allows robustness testing with various artifacts. John Kalkhof, Niklas Ihm, Tim Köhler, Bjarne Gregori, Anirban Mukhopadhyay 0003 |
Medical Image Anal. | 1 |
| 2024 | NCA-Morph: Medical Image Registration with Neural Cellular Automata
Amin Ranem, John Kalkhof, Anirban Mukhopadhyay 0003 |
BMVC | 2 |
| 2024 | Localized Data Representation with NCA-Based Autoencoders
Niklas Ihm, John Kalkhof, Anirban Mukhopadhyay 0003 |
ICPR (8) | 2 |
| 2024 | Unsupervised Training of Neural Cellular Automata on Edge Devices
John Kalkhof, Amin Ranem, Anirban Mukhopadhyay 0003 |
MICCAI (3) | 1 |
| 2023 | M3D-NCA: Robust 3D Segmentation with Built-In Quality Control
John Kalkhof, Anirban Mukhopadhyay 0003 |
MICCAI (3) | 1 |