Demo Data from EDBT 2026 / reviewers in the wild / expert
Yuling Sang
dblp:319/5757
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2025
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Artificial intelligence and machine learning · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › gene expression analysis
gene expression prediction |
0.9 | 1 | 2025 | SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics · ICML 2025 |
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics |
0.9 | 1 | 2025 | SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics · ICML 2025 |
Methods — techniques the papers use, named apart from their topics
regression-by-classification · 0.9implicit neural representation · 0.9graph-augmented autoencoder · 0.9
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial TranscriptomicsabstractSpatial Transcriptomics (ST) is a method that captures gene expression profiles aligned with spatial coordinates. The discrete spatial distribution and the super-high dimensional sequencing results make ST data challenging to be modeled effectively. In this paper, we manage to model ST in a continuous and compact manner by the proposed tool, SUICA, empowered by the great approximation capability of Implicit Neural Representations (INRs) that can enhance both the spatial density and the gene expression. Concretely within the proposed SUICA, we incorporate a graph-augmented Autoencoder to effectively model the context information of the unstructured spots and provide informative embeddings that are structure-aware for spatial mapping. We also tackle the extremely skewed distribution in a regression-by-classification fashion and enforce classification-based loss functions for the optimization of SUICA. By extensive experiments of a wide range of common ST platforms under varying degradations, SUICA outperforms both conventional INR variants and SOTA methods regarding numerical fidelity, statistical correlation, and bio-conservation. The prediction by SUICA also showcases amplified gene signatures that enriches the bio-conservation of the raw data and benefits subsequent analysis. Qingtian Zhu, Yumin Zheng, Yuling Sang, Yifan Zhan, Ziyan Zhu, Yinqiang Zheng |
ICML | 3 |