Daniel S. Elson

dblp:32/4675 · DBLP profile ↗
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28ranked-venue papers
0as first author
11since 2021 · last 2025
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 21 · 7 since 2021Graphics, computer vision, multimedia, augmented reality and games · 15 · 6 since 2021Artificial intelligence and machine learning · 7 · 4 since 2021Systems, architecture and hardware · 7 · 4 since 2021
YearPublicationVenuePosition
2025 Automatic Robotic-Assisted Diffuse Reflectance Spectroscopy Scanning System
abstract
Diffuse Reflectance Spectroscopy (DRS) is a wellestablished optical technique for tissue composition assessment which has been clinically evaluated for tumour detection to ensure the complete removal of cancerous tissue. While pointwise assessment has many potential applications, incorporating automated large-area scanning would enable holistic tissue sampling with higher consistency. We propose a robotic system to facilitate autonomous DRS scanning with hybrid visual servoing control. A specially designed height compensation module enables precise contact condition control. The evaluation results show that the system can accurately execute the scanning command and acquire consistent DRS spectra with comparable results to the manual collection, which is the current gold standard protocol. Integrating the proposed system into surgery lays the groundwork for autonomous intra-operative DRS tissue assessment with high reliability and repeatability. This could reduce the need for manual scanning by the surgeon while ensuring complete tumor removal in clinical practice.
Kaizhong Deng, Christopher J. Peters, George P. Mylonas, Daniel S. Elson
ICRA4
2025 Tracking Everything in Robotic-Assisted Surgery
abstract
Accurate tracking of tissues and instruments in videos is crucial for Robotic-Assisted Minimally Invasive Surgery (RAMIS), as it enables the robot to comprehend the surgical scene with precise locations and interactions of tissues and tools. Traditional keypoint-based sparse tracking is limited by featured points, while flow-based dense two-view matching suffers from long-term drifts. Recently, the Tracking Any Point (TAP) algorithm was proposed to overcome these limitations and achieve dense accurate long-term tracking. However, its efficacy in surgical scenarios remains untested, largely due to the lack of a comprehensive surgical tracking dataset for evaluation. To address this gap, we introduce a new annotated surgical tracking dataset for benchmarking tracking methods for surgical scenarios, comprising real-world surgical videos with complex tissue and instrument motions. We extensively evaluate state-of-the-art (SOTA) TAP-based algorithms on this dataset and reveal their limitations in challenging surgical scenarios, including fast instrument motion, severe occlusions, and motion blur, etc. Furthermore, we propose a new tracking method, namely SurgMotion, to solve the challenges and further improve the tracking performance. Our proposed method outperforms most TAP-based algorithms in surgical instruments tracking, and especially demonstrates significant improvements over baselines in challenging medical videos. Our code and dataset are available at https://github.com/zhanbh1019/SurgicalMotion.
Bohan Zhan, Yi Fang 0006, Francisco Vasconcelos 0001, Danail Stoyanov, Daniel S. Elson, Baoru Huang
ICRA7
2025 Hybrid Deep Reinforcement Learning for Radio Tracer Localisation in Robotic-Assisted Radioguided Surgery
abstract
Radioguided surgery, such as sentinel lymph node biopsy, relies on the precise localization of radioactive targets by non-imaging gamma/beta detectors. Manual radioactive target detection based on visual display or audible indication of gamma level is highly dependent on the ability of the surgeon to track and interpret the spatial information. This paper presents a learning-based method to realize the autonomous radiotracer detection in robot-assisted surgeries by navigating the probe to the radioactive target. We proposed novel hybrid approach that combines deep reinforcement learning (DRL) with adaptive robotic scanning. The adaptive grid-based scanning could provide initial direction estimation while the DRL-based agent could efficiently navigate to the target utilising historical data. Simulation experiments demonstrate a 95% success rate, and improved efficiency and robustness compared to conventional techniques. Real-world evaluation on the da Vinci Research Kit (dVRK) further confirms the feasibility of the approach, achieving an 80% success rate in radiotracer detection. This method has the potential to enhance consistency, reduce operator dependency, and improve procedural accuracy in radioguided surgeries.
Hanyi Zhang, Kaizhong Deng, Zhaoyang Jacopo Hu, Baoru Huang, Daniel S. Elson
ICRA5
2025 SurgicalGS: Dynamic 3D Gaussian Splatting for Accurate Robotic-Assisted Surgical Scene Reconstruction
Jialei Chen 0007, Mobarak I. Hoque, Francisco Vasconcelos 0001, Danail Stoyanov, Daniel S. Elson, Baoru Huang
MICCAI (11)6
2025 Towards Markerless Intraoperative Tracking of Deformable Spine Tissue
Connor Daly, Elettra Marconi, Marco Riva, Jinendra Ekanayake, Daniel S. Elson, Ferdinando Rodriguez y Baena
MICCAI (9)5
2025 SAMSA: Segment Anything Model Enhanced with Spectral Angles for Hyperspectral Interactive Medical Image Segmentation
Alfie Roddan, Tobias Czempiel, Daniel S. Elson, Stamatia Giannarou
MICCAI (9)4
2023 Detecting the Sensing Area of a Laparoscopic Probe in Minimally Invasive Cancer Surgery
Baoru Huang, Anh Nguyen 0003, Stamatia Giannarou, Daniel S. Elson
MICCAI (9)5
2022 Towards Autonomous Control of Surgical Instruments using Adaptive-Fusion Tracking and Robot Self-Calibration
abstract
The ability to track surgical instruments in realtime is crucial for autonomous Robotic Assisted Surgery (RAS). Recently, the fusion of visual and kinematic data has been proposed to track surgical instruments. However, these methods assume that both sensors are equally reliable, and cannot successfully handle cases where there are significant perturbations in one of the sensors' data. In this paper, we address this problem by proposing an enhanced fusion-based method. The main advantage of our method is that it can adjust fusion weights to adapt to sensor perturbations and failures. Another problem is that before performing an autonomous task, these robots have to be repetitively recalibrated by a human for each new patient to estimate the transformations between the different robotic arms. To address this problem, we propose a self-calibration algorithm that empowers the robot to autonomously calibrate the transformations by itself in the beginning of the surgery. We applied our fusion and selfcalibration algorithms for autonomous ultrasound tissue scanning and we showed that the robot achieved stable ultrasound imaging when using our method. Our performance evaluation shows that our proposed method outperforms the state-of-art both in normal and challenging situations.
Chiyu Wang, João Cartucho, Daniel S. Elson, Ara Darzi, Stamatia Giannarou
IROS3
2022 Self-supervised Depth Estimation in Laparoscopic Image Using 3D Geometric Consistency
Baoru Huang, Jian-Qing Zheng, Anh Nguyen 0003, Ioannis Gkouzionis, Kunal Vyas, David Tuch, Stamatia Giannarou, Daniel S. Elson
MICCAI (8)9
2021 Self-supervised Generative Adversarial Network for Depth Estimation in Laparoscopic Images
Baoru Huang, Jian-Qing Zheng, Anh Nguyen 0003, David Tuch, Kunal Vyas, Stamatia Giannarou, Daniel S. Elson
MICCAI (4)7
2021 Corrigendum to Dual-modality endoscopic probe for tissue surface shape reconstruction and hyperspectral imaging enabled by deep neural networks [Medical Image Analysis 48 (2018) 162-176/2018.06.004]
Jianyu Lin, Neil Clancy, Taran Tatla, Danail Stoyanov, Lena Maier-Hein, Daniel S. Elson
Medical Image Anal.8
2020 Surgical spectral imaging
abstract
Recent technological developments have resulted in the availability of miniaturised spectral imaging sensors capable of operating in the multi- (MSI) and hyperspectral imaging (HSI) regimes. Simultaneous advances in image-processing techniques and artificial intelligence (AI), especially in machine learning and deep learning, have made these data-rich modalities highly attractive as a means of extracting biological information non-destructively. Surgery in particular is poised to benefit from this, as spectrally-resolved tissue optical properties can offer enhanced contrast as well as diagnostic and guidance information during interventions. This is particularly relevant for procedures where inherent contrast is low under standard white light visualisation. This review summarises recent work in surgical spectral imaging (SSI) techniques, taken from Pubmed, Google Scholar and arXiv searches spanning the period 2013-2019. New hardware, optimised for use in both open and minimally-invasive surgery (MIS), is described, and recent commercial activity is summarised. Computational approaches to extract spectral information from conventional colour images are reviewed, as tip-mounted cameras become more commonplace in MIS. Model-based and machine learning methods of data analysis are discussed in addition to simulation, phantom and clinical validation experiments. A wide variety of surgical pilot studies are reported but it is apparent that further work is needed to quantify the clinical value of MSI/HSI. The current trend toward data-driven analysis emphasises the importance of widely-available, standardised spectral imaging datasets, which will aid understanding of variability across organs and patients, and drive clinical translation.
Neil Clancy, Geoffrey Jones, Lena Maier-Hein, Daniel S. Elson, Danail Stoyanov
Medical Image Anal.4
2018 Dual-modality endoscopic probe for tissue surface shape reconstruction and hyperspectral imaging enabled by deep neural networks
Jianyu Lin, Neil Clancy, Taran Tatla, Danail Stoyanov, Lena Maier-Hein, Daniel S. Elson
Medical Image Anal.8
2017 Fast Estimation of Haemoglobin Concentration in Tissue Via Wavelet Decomposition
Geoffrey Jones, Neil Clancy, Xiaofei Du 0001, Maria Robu, Simon R. Arridge, Daniel S. Elson, Danail Stoyanov
MICCAI (2)6
2017 Endoscopic Depth Measurement and Super-Spectral-Resolution Imaging
Jianyu Lin, Neil Clancy, Taran Tatla, Danail Stoyanov, Lena Maier-Hein, Daniel S. Elson
MICCAI (2)8
2017 Physiological Parameter Estimation from Multispectral Images Unleashed
Sebastian J. Wirkert, Anant Suraj Vemuri, Hannes Kenngott, Sara Moccia, Michael Götz, Benjamin F. B. Mayer, Klaus H. Maier-Hein, Daniel S. Elson, Lena Maier-Hein
MICCAI (3)8
2017 Bayesian Estimation of Intrinsic Tissue Oxygenation and Perfusion From RGB Images
abstract
Multispectral imaging (MSI) can potentially assist the intra-operative assessment of tissue structure, function and viability, by providing information about oxygenation. In this paper, we present a novel technique for recovering intrinsic MSI measurements from endoscopic RGB images without custom hardware adaptations. The advantage of this approach is that it requires no modification to existing surgical and diagnostic endoscopic imaging systems. Our method uses a radiometric color calibration of the endoscopic camera's sensor in conjunction with a Bayesian framework to recover a per-pixel measurement of the total blood volume (THb) and oxygen saturation (SO2) in the observed tissue. The sensor's pixel measurements are modeled as weighted sums over a mixture of Poisson distributions and we optimize the variables SO2and THb to maximize the likelihood of the observations. To validate our technique, we use synthetic images generated from Monte Carlo physics simulation of light transport through soft tissue containing sub-surface blood vessels. We also validate our method on in vivo data by comparing it to a MSI dataset acquired with a hardware system that sequentially images multiple spectral bands without overlap. Our results are promising and show that we are able to provide surgeons with additional relevant information by processing endoscopic images with our modeling and inference framework.
Geoffrey Jones, Neil Clancy, Yusuf Helo, Simon R. Arridge, Daniel S. Elson, Danail Stoyanov
IEEE Trans. Medical Imaging5
2016 Probe-Based Rapid Hybrid Hyperspectral and Tissue Surface Imaging Aided by Fully Convolutional Networks
abstract
Tissue surface shape and reflectance spectra provide rich intra-operative information useful in surgical guidance. We propose a hybrid system which displays an endoscopic image with a fast joint inspection of tissue surface shape using structured light (SL) and hyperspectral imaging (HSI). For SL a miniature fibre probe is used to project a coloured spot pattern onto the tissue surface. In HSI mode standard endoscopic illumination is used, with the fibre probe collecting reflected light and encoding the spatial information into a linear format that can be imaged onto the slit of a spectrograph. Correspondence between the arrangement of fibres at the distal and proximal ends of the bundle was found using spectral encoding. Then during pattern decoding, a fully convolutional network (FCN) was used for spot detection, followed by a matching propagation algorithm for spot identification. This method enabled fast reconstruction (12 frames per second) using a GPU. The hyperspectral image was combined with the white light image and the reconstructed surface, showing the spectral information of different areas. Validation of this system using phantom and ex vivo experiments has been demonstrated.
Jianyu Lin, Neil Clancy, Xueqing Sun, Mirek Janatka, Danail Stoyanov, Daniel S. Elson
MICCAI (3)7
2015 Towards a robotic-assisted cartography of the colon: A proof of concept
abstract
Colonoscopy is the gold standard screening test for colorectal cancer. However, it can miss up to 22% of lesions. One way to reduce this misrate is by guiding the endoscopist's attention towards suspicious areas (red-flagging). In this paper, we present the proof-of-concept of a novel endoscopic imaging device for the scanning of tubular organs such as the colon and the esophagus. The envisaged concept works as an accessory for any conventional flexible endoscope using it as a rail. It can generate a red-flagged map of the whole organ by orbiting and sliding a radial array of optical sensors around and along the endoscope. This concept paves the way for a semi-automated concurrent red-flagging technique for colonoscopy that enhances the endoscopist's situational awareness and reduces misrate.
Fernando B. Avila-Rencoret, Daniel S. Elson, George P. Mylonas
ICRA2
2015 Tissue Surface Reconstruction Aided by Local Normal Information Using a Self-calibrated Endoscopic Structured Light System
Jianyu Lin, Neil Clancy, Danail Stoyanov, Daniel S. Elson
MICCAI (1)4
2014 Comparative Validation of Single-Shot Optical Techniques for Laparoscopic 3-D Surface Reconstruction
abstract
Intra-operative imaging techniques for obtaining the shape and morphology of soft-tissue surfaces in vivo are a key enabling technology for advanced surgical systems. Different optical techniques for 3-D surface reconstruction in laparoscopy have been proposed, however, so far no quantitative and comparative validation has been performed. Furthermore, robustness of the methods to clinically important factors like smoke or bleeding has not yet been assessed. To address these issues, we have formed a joint international initiative with the aim of validating different state-of-the-art passive and active reconstruction methods in a comparative manner. In this comprehensive in vitro study, we investigated reconstruction accuracy using different organs with various shape and texture and also tested reconstruction robustness with respect to a number of factors like the pose of the endoscope as well as the amount of blood or smoke present in the scene. The study suggests complementary advantages of the different techniques with respect to accuracy, robustness, point density, hardware complexity and computation time. While reconstruction accuracy under ideal conditions was generally high, robustness is a remaining issue to be addressed. Future work should include sensor fusion and in vivo validation studies in a specific clinical context. To trigger further research in surface reconstruction, stereoscopic data of the study will be made publically available at www.open-CAS.com upon publication of the paper.
Lena Maier-Hein, Anja Groch, Adrien Bartoli, Sebastian Bodenstedt, G. Boissonnat, Ping-Lin Chang, Neil Clancy, Daniel S. Elson, Sven Haase, Eric Heim, Joachim Hornegger, Pierre Jannin, Hannes Kenngott, Thomas Kilgus, Beat P. Müller-Stich, D. Oladokun, Sebastian Röhl, Thiago R. dos Santos, Heinz-Peter Schlemmer, Alexander Seitel, Stefanie Speidel, Martin Wagner 0001, Danail Stoyanov
IEEE Trans. Medical Imaging8
2013 Optical techniques for 3D surface reconstruction in computer-assisted laparoscopic surgery
Lena Maier-Hein, Peter Mountney, Adrien Bartoli, Haytham Elhawary, Daniel S. Elson, Anja Groch, Andreas Kolb 0001, Marcos A. Rodrigues 0001, Jonathan M. Sorger, Stefanie Speidel, Danail Stoyanov
Medical Image Anal.5
2010 Force Adaptive Multi-spectral Imaging with an Articulated Robotic Endoscope
David P. Noonan, Christopher J. Payne, Jianzhong Shang, Vincent Sauvage, Richard C. Newton, Daniel S. Elson, Ara Darzi, Guang-Zhong Yang
MICCAI (3)6
2009 A stereoscopic fibroscope for camera motion and 3D depth recovery during Minimally Invasive Surgery
abstract
This paper introduces a stereoscopic fibroscope imaging system for minimally invasive surgery (MIS) and examines the feasibility of utilizing images transmitted from the distal fibroscope tip to a proximally mounted CCD camera to recover both camera motion and 3D scene information. Fibre image guides facilitate instrument miniaturization and have the advantage of being more easily integrated with articulated robotic instruments. In this paper, twin 10,000 pixel coherent fibre bundles (590mum diameter) have been integrated into a bespoke laparoscopic imaging instrument. Images captured by the system have been used to build a 3D map of the environment and reconstruct the laparoscope's 3D pose and motion using a SLAM algorithm. Detailed phantom validation of the system demonstrates its practical value and potential for flexible MIS instrument integration due to the small footprint and flexible nature of the fibre image guides.
David P. Noonan, Peter Mountney, Daniel S. Elson, Ara Darzi, Guang-Zhong Yang
ICRA3
2009 Illumination position estimation for 3D soft-tissue reconstruction in robotic minimally invasive surgery
abstract
For robotic assisted minimally invasive surgery, recovering the 3D soft-tissue shape and morphology in vivo is important for providing image-guidance, motion compensation and applying dynamic active constraints. In this paper, we propose a practical method for calibrating the illumination source position in monocular and stereoscopic laparoscopes. The method relies on using the geometric constraints from specular reflections obtained during the laparoscope camera calibration process. By estimating the light source position, the method forgoes the common assumption of coincidence with the camera centre and can be used to obtain constraints on the normal of the surface geometry during surgery from specularities. We demonstrate the effectiveness of the proposed approach with numerical simulations and by qualitative analysis of real stereo-laparoscopic calibrations.
Danail Stoyanov, Daniel S. Elson, Guang-Zhong Yang
IROS2
2009 Optical Biopsy Mapping for Minimally Invasive Cancer Screening
Peter Mountney, Stamatia Giannarou, Daniel S. Elson, Guang-Zhong Yang
MICCAI (1)3
2008 Optimal Feature Selection Applied to Multispectral Fluorescence Imaging
Tobias C. Wood, Surapa Thiemjarus, Kevin R. Koh, Daniel S. Elson, Guang-Zhong Yang
MICCAI (2)4
2006 Tissue Characterization Using Dimensionality Reduction and Fluorescence Imaging
Karim Lekadir, Daniel S. Elson, Jose Requejo-Isidro, Christopher Dunsby, James McGinty, Neil Galletly, Gordon Stamp, Paul M. W. French, Guang-Zhong Yang
MICCAI (2)2