Testing a hypothesized causal model against observational data is a key prerequisite for many causal inference tasks. A natural approach is to test whether the conditional independence relations (CIs) assumed in the model hold in the data. While a model can assume exponentially many CIs (with respect to the number of variables), testing all of them is both impractical and unnecessary. Causal graphs, which encode these CIs in polynomial space, give rise to local Markov properties that enable model testing with a significantly smaller subset of CIs. Model testing based on local properties requires an algorithm to list the relevant CIs. However, existing algorithms for realistic settings with hidden variables and non-parametric distributions can take exponential time to produce even a single CI constraint. In this paper, we introduce the c-component local Markov property (C-LMP) for causal graphs with hidden variables. Since C-LMP can still invoke an exponential number of CIs, we develop a polynomial delay algorithm to list these CIs in poly-time intervals. To our knowledge, this is the first algorithm that enables poly-delay testing of CIs in causal graphs with hidden variables against arbitrary data distributions. Experiments on real-world and synthetic data demonstrate the practicality of our algorithm.

Greedy Equivalence Search (GES) is a classic score-based algorithm for causal discovery from observational data. In the sample limit, it recovers the Markov equivalence class of graphs that describe the data. Still, it faces two challenges in practice: computational cost and finite-sample accuracy. In this paper, we develop Less Greedy Equivalence Search (LGES), a variant of GES that retains its theoretical guarantees while partially addressing these limitations. LGES modifies the greedy step; rather than always applying the highest-scoring insertion, it avoids edge insertions between variables for which the score implies some conditional independence. This more targeted search yields up to a $10$-fold speed-up and a substantial reduction in structural error relative to GES. Moreover, LGES can guide the search using prior knowledge, and can correct this knowledge when contradicted by data. Finally, LGES can use interventional data to refine the learned observational equivalence class. We prove that LGES recovers the true equivalence class in the sample limit, even with misspecified knowledge. Experiments demonstrate that LGES outperforms GES and other baselines in speed, accuracy, and robustness to misspecified knowledge. Our code is available at https://github.com/CausalAILab/lges}{https://github.com/CausalAILab/lges.