Significant strides have been made using large vision-language models, like Stable Diffusion (SD), for a variety of downstream tasks, including image generation, image editing, and 3D shape generation. Inspired by these advancements, we explore leveraging these vision-language models for segmenting images at any desired granularity using as few as one annotated sample. We propose SLiMe, which frames this problem as an optimization task. Specifically, given a single image and its segmentation mask, we first extract our novel “weighted accumulated self-attention map” along with cross-attention map from the SD prior. Then, using these extracted maps, the text embeddings of SD are optimized to highlight the segmented region in these attention maps, which in turn can be used to derive new segmentation results. Moreover, leveraging additional training data when available, i.e. few-shot, improves the performance of SLiMe. We performed comprehensive experiments examining various design factors and showed that SLiMe outperforms other existing one-shot and few-shot segmentation methods.

Microsatellite instability (MSI) refers to alterations in the length of simple repetitive genomic sequences. MSI status serves as a prognostic and predictive factor in colorectal cancer. The MSI-high status is a good prognostic factor in stage II/III cancer, and predicts a lack of benefit to adjuvant fluorouracil chemotherapy in stage II cancer but a good response to immunotherapy in stage IV cancer. Therefore, determining MSI status in patients with colorectal cancer is important for identifying the appropriate treatment protocol. In the Pathology Artificial Intelligence Platform (PAIP) 2020 challenge, artificial intelligence researchers were invited to predict MSI status based on colorectal cancer slide images. Participants were required to perform two tasks. The primary task was to classify a given slide image as belonging to either the MSI-high or the microsatellite-stable group. The second task was tumor area segmentation to avoid ties with the main task. A total of 210 of the 495 participants enrolled in the challenge downloaded the images, and 23 teams submitted their final results. Seven teams from the top 10 participants agreed to disclose their algorithms, most of which were convolutional neural network-based deep learning models, such as EfficientNet and UNet. The top-ranked system achieved the highest F1 score (0.9231). This paper summarizes the various methods used in the PAIP 2020 challenge. This paper supports the effectiveness of digital pathology for identifying the relationship between colorectal cancer and the MSI characteristics.

A fundamental challenge of over-parameterized deep learning models is learning meaningful data representations that yield good performance on a downstream task without over-fitting spurious input features. This work proposes MaskTune, a masking strategy that prevents over-reliance on spurious (or a limited number of) features. MaskTune forces the trained model to explore new features during a single epoch finetuning by masking previously discovered features. MaskTune, unlike earlier approaches for mitigating shortcut learning, does not require any supervision, such as annotating spurious features or labels for subgroup samples in a dataset. Our empirical results on biased MNIST, CelebA, Waterbirds, and ImagenNet-9L datasets show that MaskTune is effective on tasks that often suffer from the existence of spurious correlations. Finally, we show that \method{} outperforms or achieves similar performance to the competing methods when applied to the selective classification (classification with rejection option) task. Code for MaskTune is available at https://github.com/aliasgharkhani/Masktune.

Detecting various types of cells in and around the tumor matrix holds a special significance in characterizing the tumor micro-environment for cancer prognostication and research. Automating the tasks of detecting, segmenting, and classifying nuclei can free up the pathologists' time for higher value tasks and reduce errors due to fatigue and subjectivity. To encourage the computer vision research community to develop and test algorithms for these tasks, we prepared a large and diverse dataset of nucleus boundary annotations and class labels. The dataset has over 46,000 nuclei from 37 hospitals, 71 patients, four organs, and four nucleus types. We also organized a challenge around this dataset as a satellite event at the International Symposium on Biomedical Imaging (ISBI) in April 2020. The challenge saw a wide participation from across the world, and the top methods were able to match inter-human concordance for the challenge metric. In this paper, we summarize the dataset and the key findings of the challenge, including the commonalities and differences between the methods developed by various participants. We have released the MoNuSAC2020 dataset to the public.