Millions of RNA sequencing samples have been deposited into public databases, providing a rich resource for biological research. These datasets encompass tens of thousands of experiments and offer comprehensive insights into human cellular regulation. However, a major challenge is how to integrate these experiments that acquired at different conditions. We propose a new statistical tool based on beta-binomial distributions that can construct robust gene co-regulation network (CoRegNet) across tens of thousands of experiments. Our analysis of over 12 000 experiments involving human tissues and cells shows that CoRegNet significantly outperforms existing gene co-expression-based methods. Although the majority of the genes are linearly co-regulated, we did discover an interesting set of genes that are non-linearly co-regulated; half of the time they change in the same direction and the other half they change in the opposite direction. Additionally, we identified a set of gene pairs that follows the Simpson's paradox. By utilizing public domain data, CoRegNet offers a powerful approach for identifying functionally related gene pairs, thereby revealing new biological insights.

More than US$ 27 billion is estimated to have been paid-out in farm support in USA alone since 1991 in response to climate change impacts on agriculture, with costs likely continuing to rise. With the wider adoption of precision agriculture - an agriculture management strategy that involves gathering, processing and analyzing temporal, spatial and individual data - in both developed and developing countries, there is an increasing opportunity to harness accumulating, shareable, big data using artificial intelligence (AI) methods, collected from weather stations, field sensor networks, Internet-of-Things devices, unmanned aerial vehicles, and earth observational satellites. This requires smart algorithms tailored to agricultural data types, integrated into digital solutions that are viable, flexible, and scalable for wide deployment for a wide variety of agricultural users and decision-makers. We discuss a novel AI approach that addresses the real-world problem of developing a viable solution for reliably, timely, and cost-effectively forecasting crop status across large agricultural regions using Earth observational information in near-real-time. Our approach is based on extracting time-conditioned topological features which characterize complex spatio-temporal dependencies between crop production regions and integrating such topological signatures into Long Short Term Memory (LSTM). We discuss utility and limitations of the resulting zigzag persistence-based LSTM (ZZTop-LSTM) as a new tool for developing more informed crop insurance rate-making and accurate tracking of changing risk exposures and vulnerabilities within insurance risk areas.