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Marialuisa Sponziello

dblp:328/8719 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2022
0000-0003-0736-1047ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › genomics › computational genomics
disease gene prioritization
0.612022
Biological Random Walks: multi-omics integration for disease gene prioritization · Bioinform. 2022
Bioinformatics and computational biology › network bioinformatics › biological network analysis › network-based prediction
network-based gene prioritization
0.612022
Biological Random Walks: multi-omics integration for disease gene prioritization · Bioinform. 2022
Bioinformatics and computational biology › protein analysis › protein-protein interaction
interactome analysis
0.212022
Biological Random Walks: multi-omics integration for disease gene prioritization · Bioinform. 2022
Bioinformatics and computational biology
multi-omics data integration
0.212022
Biological Random Walks: multi-omics integration for disease gene prioritization · Bioinform. 2022

Methods — techniques the papers use, named apart from their topics

random walk · 0.6network propagation · 0.6
YearPublicationVenuePosition
2022 Biological Random Walks: multi-omics integration for disease gene prioritization
abstract
MOTIVATION: Over the past decade, network-based approaches have proven useful in identifying disease modules within the human interactome, often providing insights into key mechanisms and guiding the quest for therapeutic targets. This is all the more important, since experimental investigation of potential gene candidates is an expensive task, thus not always a feasible option. On the other hand, many sources of biological information exist beyond the interactome and an important research direction is the design of effective techniques for their integration. RESULTS: In this work, we introduce the Biological Random Walks (BRW) approach for disease gene prioritization in the human interactome. The proposed framework leverages multiple biological sources within an integrated framework. We perform an extensive, comparative study of BRW's performance against well-established baselines. AVAILABILITY AND IMPLEMENTATION: All codes are publicly available and can be downloaded at https://github.com/LeoM93/BiologicalRandomWalks. We used publicly available datasets, details on their retrieval and preprocessing are provided in the Supplementary Material. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Michele Gentili, Leonardo Martini, Marialuisa Sponziello, Luca Becchetti
Bioinform.3