Demo Data from EDBT 2026 / reviewers in the wild / expert
Franco Pradelli
dblp:330/4364
· DBLP profile ↗
2ranked-venue papers
2as first author
2since 2021 · last 2025
0000-0002-7152-5512ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 2 · 2 first-author · 2 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 50% Computational science and engineering · 50% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › computational oncology
cancer modeling |
0.6 | 1 | 2022 | Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models · Bioinform. 2022 |
Computational science and engineering
partial differential equation solver |
0.6 | 1 | 2022 | Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models · Bioinform. 2022 |
Methods — techniques the papers use, named apart from their topics
phase field model · 0.6finite element method · 0.6agent-based model · 0.6
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | Mathematical modeling and simulation of tumor-induced angiogenesis in retinal hemangioblastomaabstractRetinal Hemangioblastoma (RH) is the most frequent manifestation of the von Hippel-Lindau syndrome (VHL), a rare disease associated with the germline mutation of the von Hippel-Lindau protein (pVHL). An emblematic feature of RH is the high vascularity, which is explained by the overexpression of angiogenic factors (AFs) arising from the pVHL impairment. The introduction of Optical Coherence Tomography Angiography (OCTA) allowed observing this feature with exceptional detail. Here, we combine OCTA images and a mechanistic model to investigate tumor growth and vascular development in a patient-specific way. We derived our model from the agreed pathology for RH and focused on the earliest stages of tumor-induced angiogenesis. Our simulations closely resemble the medical images, supporting the capability of our model to simulate vascular patterning in actual patients. Our results also suggest that angiogenesis in RH occurs upon reaching a critical dimension (around 200 μm), followed by the rapid formation of stable vascular networks. These findings open a new perspective on the crucial role of time in antiangiogenic therapy in RH, which has resulted in ineffective control. Indeed, it might be that when RH is diagnosed, angiogenesis is already too advanced to be effectively targeted with any effective means. Moreover, our simulations suggest that vascularization in RH is not a continuous process but an inconstant development with long, stable phases and rapid episodes of vascular sprouting. Franco Pradelli, Giovanni Minervini, Pradeep Venkatesh, Shorya Azad, Hector Gomez, Silvio C. E. Tosatto |
PLoS Comput. Biol. | 1 |
| 2022 | Mocafe: a comprehensive Python library for simulating cancer development with Phase Field ModelsabstractSUMMARY: Mathematical models are effective in studying cancer development at different scales from metabolism to tissue. Phase Field Models (PFMs) have been shown to reproduce accurately cancer growth and other related phenomena, including expression of relevant molecules, extracellular matrix remodeling and angiogenesis. However, implementations of such models are rarely published, reducing access to these techniques. To reduce this gap, we developed Mocafe, a modular open-source Python package that implements some of the most important PFMs reported in the literature. Mocafe is designed to handle both PFMs purely based on differential equations and hybrid agent-based PFMs. Moreover, Mocafe is meant to be extensible, allowing the inclusion of new models in future releases. AVAILABILITY AND IMPLEMENTATION: Mocafe is a Python package based on FEniCS, a popular computing platform for solving partial differential equations. The source code, extensive documentation and demos are provided on GitHub at URL: https://github.com/BioComputingUP/mocafe. Moreover, we uploaded on Zenodo an archive of the package, which is available at https://doi.org/10.5281/zenodo.6366052. Franco Pradelli, Giovanni Minervini, Silvio C. E. Tosatto |
Bioinform. | 1 |