EDBT 2026 Demo / reviewers in the wild / expert
Juan José Moreno
dblp:331/8183
· DBLP profile ↗
12ranked-venue papers
7as first author
8since 2021 · last 2026
0000-0002-2194-2318ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Systems, architecture and hardware · 9 · 5 first-author · 7 since 2021Theory of computation · 2 · 1 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Fast automatic radiotherapy planning via algorithmic improvements and computational accelerationabstractIntensity-Modulated Radiation Therapy enhances dose delivery by dynamically adjusting beam intensities to target tumorous tissues while preserving healthy organs. One of the most effective planning approaches uses the Generalized Equivalent Uniform Dose metric, which ensures high-quality treatment plans but requires tuning several hyperparameters for each anatomical structure. Traditionally, this process is performed manually by clinical experts, making it time-consuming and dependent on human expertise. To address these challenges, a previous method combined multi-objective evolutionary search with gradient-based optimization to automate the tuning process. However, this hybrid strategy incurs high computational cost, as each candidate solution must undergo a complete gradient-based optimization step, repeated thousands of times throughout the process. This study introduces two complementary strategies to improve the efficiency of this framework. First, we analyze alternative multi-objective evolutionary algorithms that converge more rapidly, thereby reducing the number of required function evaluations, and we compare three gradient-based optimization methods to identify the one that accelerates convergence without compromising plan quality. Second, we implement a parallel computing framework that distributes the function evaluations across heterogeneous multicore computing clusters using a static batch scheduling strategy adapted to each node’s computational capacity. Combined, these algorithmic and computational enhancements yield an acceleration factor of 4049 compared to the original implementation. As a result, high-quality radiotherapy treatment plans can be automatically generated in approximately one hour, making this approach viable for integration into time-constrained clinical workflows. Juan José Moreno, Savíns Puertas-Martín, Nelson Garcia Roman, Juana López Redondo, Ester M. Garzón |
Future Gener. Comput. Syst. | 1 |
| 2025 | Where High-Performance Computing Meets Radiotherapy for Enhanced Intensity-Modulated Radiation Therapy PlanningabstractABSTRACT Intensity Modulated Radiotherapy (IMRT) employs radiation beams with varying angles and intensities to precisely target cancerous tissues while sparing healthy organs. Planning methods based on the generalized Equivalent Uniform Dose (gEUD) metric achieve excellent Planning Target Volume coverage. However, computing these plans requires extensive parameter adjustments and multiple model evaluations, making the process resource‐intensive and time‐consuming. This study aims to enhance the computational efficiency of radiotherapy plans by automating the adjustment of gEUD parameters, reducing solution times, and facilitating clinical integration. We introduced a novel approach that combines Gradient Descent algorithms with evolutionary optimization to explore the gEUD parameter space. This hybrid methodology generates radiation plans that meet clinical constraints. To address the high computational costs, we implemented parallelization and batching strategies, leveraging multicore servers to accelerate the optimization process and enable real‐time clinical applications. Benchmarking was conducted on three multicore platforms with distinct micro‐architectures, testing various batch sizes and thread configurations. Using a dataset of three Head and Neck IMRT patients treated with nine beams, our approach demonstrated substantial computational speed‐ups. Results confirmed the ability of the method to consistently produce high‐quality radiation therapy plans that meet clinical constraints. By effectively exploiting multicore servers, this approach overcomes the computational challenges of gEUD parameter tuning, enabling its integration into clinical practice. This advancement reduces planning times, supports medical physicists, and ultimately enhances patient care in radiotherapy. Juan José Moreno, Savíns Puertas-Martín, Juana López Redondo, Pilar Martínez Ortigosa, Ester M. Garzón |
Concurr. Comput. Pract. Exp. | 1 |
| 2024 | Acceleration of 3D feature-enhancing noise filtering in hybrid CPU/GPU systems
Vicente González Ruiz, Juan José Moreno, José-Jesús Fernández |
J. Supercomput. | 2 |
| 2023 | Improving drug discovery through parallelism
Jerónimo S. García, Savíns Puertas-Martín, Juana López Redondo, Juan José Moreno, Pilar Martínez Ortigosa |
J. Supercomput. | 4 |
| 2022 | On the 2-domination Number of Cylinders with Small CyclesabstractDomination-type parameters are difficult to manage in Cartesian product graphs and there is usually no general relationship between the parameter in both factors and in the product graph. This is the situation of the domination number, the Roman domination number or the $2$-domination number, among others. Contrary to what happens with the domination number and the Roman domination number, the $2$-domination number remains unknown in cylinders, that is, the Cartesian product of a cycle and a path and in this paper, we will compute this parameter in the cylinders with small cycles. We will develop two algorithms involving the $(\min,+)$ matrix product that will allow us to compute the desired values of $\gamma_2(C_n\Box P_m)$, with $3\leq n\leq 15$ and $m\geq 2$. We will also pose a conjecture about the general formulae for the $2$-domination number in this graph class. Comment: 15 pages, 1 figure Ester M. Garzón, José Antonio Martínez, Juan José Moreno, María Luz Puertas |
Fundam. Informaticae | 3 |
| 2022 | HPC acceleration of large (min, +) matrix products to compute domination-type parameters in graphsabstractAbstract The computation of the domination-type parameters is a challenging problem in Cartesian product graphs. We present an algorithmic method to compute the 2-domination number of the Cartesian product of a path with small order and any cycle, involving the $$(\min ,+)$$ ( min , + ) matrix product. We establish some theoretical results that provide the algorithms necessary to compute that parameter, and the main challenge to run such algorithms comes from the large size of the matrices used, which makes it necessary to improve the techniques to handle these objects. We analyze the performance of the algorithms on modern multicore CPUs and on GPUs and we show the advantages over the sequential implementation. The use of these platforms allows us to compute the 2-domination number of cylinders such that their paths have at most 12 vertices. Ester M. Garzón, José Antonio Martínez, Juan José Moreno, María Luz Puertas |
J. Supercomput. | 3 |
| 2022 | HPC enables efficient 3D membrane segmentation in electron tomography
Juan José Moreno, Ester M. Garzón, José-Jesús Fernández, Antonio Martínez-Sánchez |
J. Supercomput. | 1 |
| 2021 | Parallel radiation dose computations with GENOCOP III on GPUs
Juan José Moreno, Janusz Miroforidis, Ernestas Filatovas, Ignacy Kaliszewski, Ester M. Garzón |
J. Supercomput. | 1 |
| 2018 | TomoEED: fast edge-enhancing denoising of tomographic volumesabstractSummary: TomoEED is an optimized software tool for fast feature-preserving noise filtering of large 3D tomographic volumes on CPUs and GPUs. The tool is based on the anisotropic nonlinear diffusion method. It has been developed with special emphasis in the reduction of the computational demands by using different strategies, from the algorithmic to the high performance computing perspectives. TomoEED manages to filter large volumes in a matter of minutes in standard computers. Availability and implementation: TomoEED has been developed in C. It is available for Linux platforms at http://www.cnb.csic.es/%7ejjfernandez/tomoeed. Supplementary information: Supplementary data are available at Bioinformatics online. Juan José Moreno, Antonio Martínez-Sánchez, José Antonio Martínez, Ester M. Garzón, José-Jesús Fernández |
Bioinform. | 1 |
| 2018 | Improving the performance and energy of Non-Dominated Sorting for evolutionary multiobjective optimization on GPU/CPU platforms
Juan José Moreno, Gloria Ortega, Ernestas Filatovas, José Antonio Martínez, Ester M. Garzón |
J. Glob. Optim. | 1 |
| 2017 | An approach to optimise the energy efficiency of iterative computation on integrated GPU-CPU systems
Ester M. Garzón, Juan José Moreno, José Antonio Martínez |
J. Supercomput. | 2 |
| 2017 | Using low-power platforms for Evolutionary Multi-Objective Optimization algorithms
Juan José Moreno, Gloria Ortega, Ernestas Filatovas, José Antonio Martínez, Ester M. Garzón |
J. Supercomput. | 1 |