This paper systematically explores neural functional networks (NFN) for transformer architectures. NFN are specialized neural networks that treat the weights, gradients, or sparsity patterns of a deep neural network (DNN) as input data and have proven valuable for tasks such as learnable optimizers, implicit data representations, and weight editing. While NFN have been extensively developed for MLP and CNN, no prior work has addressed their design for transformers, despite the importance of transformers in modern deep learning. This paper aims to address this gap by providing a systematic study of NFN for transformers. We first determine the maximal symmetric group of the weights in a multi-head attention module as well as a necessary and sufficient condition under which two sets of hyperparameters of the multi-head attention module define the same function. We then define the weight space of transformer architectures and its associated group action, which leads to the design principles for NFN in transformers. Based on these, we introduce Transformer-NFN, an NFN that is equivariant under this group action. Additionally, we release a dataset of more than 125,000 Transformers model checkpoints trained on two datasets with two different tasks, providing a benchmark for evaluating Transformer-NFN and encouraging further research on transformer training and performance.

Many variants of Optimal Transport (OT) have been developed to address its heavy computation. Among them, notably, Sliced Wasserstein (SW) is widely used for application domains by projecting the OT problem onto one-dimensional lines, and leveraging the closed-form expression of the univariate OT to reduce the computational burden. However, projecting measures onto low-dimensional spaces can lead to a loss of topological information. To mitigate this issue, in this work, we propose to replace one-dimensional lines with a more intricate structure, called tree systems. This structure is metrizable by a tree metric, which yields a closed-form expression for OT problems on tree systems. We provide an extensive theoretical analysis to formally define tree systems with their topological properties, introduce the concept of splitting maps, which operate as the projection mechanism onto these structures, then finally propose a novel variant of Radon transform for tree systems and verify its injectivity. This framework leads to an efficient metric between measures, termed Tree-Sliced Wasserstein distance on Systems of Lines (TSW-SL). By conducting a variety of experiments on gradient flows, image style transfer, and generative models, we illustrate that our proposed approach performs favorably compared to SW and its variants.

A neural functional network (NFN) is a specialized type of neural network designed to process and learn from entire neural networks as input data. Recent NFNs have been proposed with permutation and scaling equivariance based on either graph-based message-passing mechanisms or parameter-sharing mechanisms. Compared to graph-based models, parameter-sharing-based NFNs built upon equivariant linear layers exhibit lower memory consumption and faster running time. However, their expressivity is limited due to the large size of the symmetric group of the input neural networks. The challenge of designing a permutation and scaling equivariant NFN that maintains low memory consumption and running time while preserving expressivity remains unresolved. In this paper, we propose a novel solution with the development of MAGEP-NFN (**M**onomial m**A**trix **G**roup **E**quivariant **P**olynomial **NFN**). Our approach follows the parameter-sharing mechanism but differs from previous works by constructing a nonlinear equivariant layer represented as a polynomial in the input weights. This polynomial formulation enables us to incorporate additional relationships between weights from different input hidden layers, enhancing the model's expressivity while keeping memory consumption and running time low, thereby addressing the aforementioned challenge. We provide empirical evidence demonstrating that MAGEP-NFN achieves competitive performance and efficiency compared to existing baselines.

The posterior collapse phenomenon in variational autoencoder (VAE), where the variational posterior distribution closely matches the prior distribution, can hinder the quality of the learned latent variables. As a consequence of posterior collapse, the latent variables extracted by the encoder in VAE preserve less information from the input data and thus fail to produce meaningful representations as input to the reconstruction process in the decoder. While this phenomenon has been an actively addressed topic related to VAE performance, the theory for posterior collapse remains underdeveloped, especially beyond the standard VAE. In this work, we advance the theoretical understanding of posterior collapse to two important and prevalent yet less studied classes of VAE: conditional VAE and hierarchical VAE. Specifically, via a non-trivial theoretical analysis of linear conditional VAE and hierarchical VAE with two levels of latent, we prove that the cause of posterior collapses in these models includes the correlation between the input and output of the conditional VAE and the effect of learnable encoder variance in the hierarchical VAE. We empirically validate our theoretical findings for linear conditional and hierarchical VAE and demonstrate that these results are also predictive for non-linear cases with extensive experiments.

The current paradigm of training deep neural networks for classification tasks includes minimizing the empirical risk, pushing the training loss value towards zero even after the training classification error has vanished. In this terminal phase of training, it has been observed that the last-layer features collapse to their class-means and these class-means converge to the vertices of a simplex Equiangular Tight Frame (ETF). This phenomenon is termed as Neural Collapse ($\mathcal{NC}$). However, this characterization only holds in class-balanced datasets where every class has the same number of training samples. When the training dataset is class-imbalanced, some $\mathcal{NC}$ properties will no longer hold true, for example, the geometry of class-means will skew away from the simplex ETF. In this paper, we generalize $\mathcal{NC}$ to imbalanced regime for cross-entropy loss under the unconstrained ReLU features model. We demonstrate that while the within-class features collapse property still holds in this setting, the class-means will converge to a structure consisting of orthogonal vectors with lengths dependent on the number of training samples. Furthermore, we find that the classifier weights (i.e., the last-layer linear classifier) are aligned to the scaled and centered class-means, with scaling factors dependent on the number of training samples of each class. This generalizes $\mathcal{NC}$ in the class-balanced setting. We empirically validate our results through experiments on practical architectures and dataset.

Transformers have increasingly become the de facto method to model sequential data with state-of-the-art performance. Due to its widespread use, being able to estimate and calibrate its modeling uncertainty is important to understand and design robust transformer models. To achieve this, previous works have used Gaussian processes (GPs) to perform uncertainty calibration for the attention units of transformers and attained notable successes. However, such approaches have to confine the transformers to the space of symmetric attention to ensure the necessary symmetric requirement of their GP’s kernel specification, which reduces the representation capacity of the model. To mitigate this restriction, we propose the Correlated Gaussian Process Transformer (CGPT), a new class of transformers whose self-attention units are modeled as cross-covariance between two correlated GPs (CGPs). This allows asymmetries in attention and can enhance the representation capacity of GP-based transformers. We also derive a sparse approximation for CGP to make it scale better. Our empirical studies show that both CGP-based and sparse CGP-based transformers achieve better performance than state-of-the-art GP-based transformers on a variety of benchmark tasks.

Modern deep neural networks have achieved impressive performance on tasks from image classification to natural language processing. Surprisingly, these complex systems with massive amounts of parameters exhibit the same structural properties in their last-layer features and classifiers across canonical datasets when training until convergence. In particular, it has been observed that the last-layer features collapse to their class-means, and those class-means are the vertices of a simplex Equiangular Tight Frame (ETF). This phenomenon is known as Neural Collapse (NC). Recent papers have theoretically shown that NC emerges in the global minimizers of training problems with the simplified ``unconstrained feature model''. In this context, we take a step further and prove the NC occurrences in deep linear networks for the popular mean squared error (MSE) and cross entropy (CE) losses, showing that global solutions exhibit NC properties across the linear layers. Furthermore, we extend our study to imbalanced data for MSE loss and present the first geometric analysis of NC under bias-free setting. Our results demonstrate the convergence of the last-layer features and classifiers to a geometry consisting of orthogonal vectors, whose lengths depend on the amount of data in their corresponding classes. Finally, we empirically validate our theoretical analyses on synthetic and practical network architectures with both balanced and imbalanced scenarios.