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Won-Keun Kim

dblp:348/1228 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2023
0000-0003-3178-8569ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis
genomic sequence analysis		 0.712023
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing · Bioinform. 2023
Bioinformatics and computational biology › sequence analysis
nanopore sequencing		 0.712023
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing · Bioinform. 2023
Bioinformatics and computational biology › sequence analysis
sequencing data analysis		 0.712023
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing · Bioinform. 2023

Methods — techniques the papers use, named apart from their topics

nextflow pipeline · 0.7
YearPublicationVenuePosition
2023 VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing
abstract
Detection and analysis of viral genomes with Nanopore sequencing has shown great promise in the surveillance of pathogen outbreaks. However, the number of virus detection pipelines supporting Nanopore sequencing is very limited. Here, we present VirPipe, a new pipeline for the detection of viral genomes from Nanopore or Illumina sequencing input featuring streamlined installation and customization. AVAILABILITY AND IMPLEMENTATION: VirPipe source code and documentation are freely available for download at https://github.com/KijinKims/VirPipe, implemented in Python and Nextflow.
Kijin Kim, Kyungmin Park, Seonghyeon Lee, Seung-Hwan Baek, Tae-Hun Lim, Balachandran Manavalan, Jin-Won Song, Won-Keun Kim
 Bioinform.9