Despite empirical risk minimization (ERM) is widely applied in the machine learning community, its performance is limited on data with spurious correlation or subpopulation that is introduced by hidden attributes. Existing literature proposed techniques to maximize group-balanced or worst-group accuracy when such correlation presents, yet, at the cost of lower average accuracy. In addition, many existing works conduct surveys on different subpopulation methods without revealing the inherent connection between these methods, which could hinder the technology advancement in this area. In this paper, we identify important sampling as a simple yet powerful tool for solving the subpopulation problem. On the theory side, we provide a new systematic formulation of the subpopulation problem, and explicitly identify the assumptions that are not clearly stated in the existing works. This helps to uncover the cause of the dropped average accuracy. We provide the first theoretical discussion on the connections of existing methods, revealing the core components that make them different. On the application side, we demonstrate a single estimator is enough to solve the subpopulation problem. In particular, we introduce the estimator in both attribute-known and -unknown scenarios in the subpopulation setup, offering flexibility in practical use cases. And empirically, we achieve state-of-the-art performance on commonly used benchmark datasets.

Most retrieval-based report generation methods rely on sentence-level templates, which often introduce ambiguities due to similar semantics across different sentences. To overcome this, we propose a phrase-level framework, comprising automatic phrase template extraction and report generation based on retrieval. In the first stage, we introduce a phrase scoring mechanism to evaluate the semantics and importance of phrases, enabling efficient template extraction. In the second stage, we retrieve relevant templates and fuse their features with visual features from the radiograph through a Retrieval-Aggregation strategy. The dynamic update of the template bank during training improves template representations. Experiments on IU X-Ray and MIMIC-CXR datasets demonstrate the effectiveness of our method in generating accurate radiology reports.

The automatic generation of radiology reports is of great significance, which can reduce the workload of doctors and improve the accuracy and reliability of medical diagnosis and treatment, and has attracted wide attention in recent years. Cross-modal mapping between images and text, a key component of generating high-quality reports, is challenging due to the lack of corresponding annotations. Despite its importance, previous studies have often overlooked it or lacked adequate designs for this crucial component. In this paper, we propose a method with memory alignment embedding to assist the model in aligning visual and textual features to generate a coherent and informative report. Specifically, we first get the memory alignment embedding by querying the memory matrix, where the query is derived from a combination of the visual features and their corresponding positional embeddings. Then the alignment between the visual and textual features can be guided by the memory alignment embedding during the generation process. The comparison experiments with other alignment methods show that the proposed alignment method is less costly and more effective. The proposed approach achieves better performance than state-of-the-art approaches on two public datasets IU X-Ray and MIMIC-CXR, which further demonstrates the effectiveness of the proposed alignment method.

Model-X knockoff has garnered significant attention among various feature selection methods due to its guarantees for controlling the false discovery rate (FDR). Since its introduction in parametric design, knockoff techniques have evolved to handle arbitrary data distributions using deep learning-based generative models. However, we have observed limitations in the current implementations of the deep Model-X knockoff framework. Notably, the "swap property" that knockoffs require often faces challenges at the sample level, resulting in diminished selection power. To address these issues, we develop "Deep Dependency Regularized Knockoff (DeepDRK)," a distribution-free deep learning method that effectively balances FDR and power. In DeepDRK, we introduce a novel formulation of the knockoff model as a learning problem under multi-source adversarial attacks. By employing an innovative perturbation technique, we achieve lower FDR and higher power. Our model outperforms existing benchmarks across synthetic, semi-synthetic, and real-world datasets, particularly when sample sizes are small and data distributions are non-Gaussian.

The methods of geometric morphometrics are commonly used to quantify morphology in a broad range of biological sciences. The application of these methods to large datasets is constrained by manual landmark placement limiting the number of landmarks and introducing observer bias. To move the field forward, we need to automate morphological phenotyping in ways that capture comprehensive representations of morphological variation with minimal observer bias. Here, we present Morphological Variation Quantifier (morphVQ), a shape analysis pipeline for quantifying, analyzing, and exploring shape variation in the functional domain. morphVQ uses descriptor learning to estimate the functional correspondence between whole triangular meshes in lieu of landmark configurations. With functional maps between pairs of specimens in a dataset we can analyze and explore shape variation. morphVQ uses Consistent ZoomOut refinement to improve these functional maps and produce a new representation of shape variation, area-based and conformal (angular) latent shape space differences (LSSDs). We compare this new representation of shape variation to shape variables obtained via manual digitization and auto3DGM, an existing approach to automated morphological phenotyping. We find that LSSDs compare favorably to modern 3DGM and auto3DGM while being more computationally efficient. By characterizing whole surfaces, our method incorporates more morphological detail in shape analysis. We can classify known biological groupings, such as Genus affiliation with comparable accuracy. The shape spaces produced by our method are similar to those produced by modern 3DGM and to auto3DGM, and distinctiveness functions derived from LSSDs show us how shape variation differs between groups. morphVQ can capture shape in an automated fashion while avoiding the limitations of manually digitized landmarks, and thus represents a novel and computationally efficient addition to the geometric morphometrics toolkit.

In this work, we investigate the problem of lifestyle analysis and build a visual lifelogging dataset for lifestyle analysis (VLDLA). The VLDLA contains images captured by a wearable camera every 3 seconds from 8:00 am to 6:00 pm for seven days. In contrast to current lifelogging/egocentric datasets, our dataset is suitable for lifestyle analysis as images are taken with short intervals to capture activities of short duration; moreover, images are taken continuously from morning to evening to record all the activities performed by a user. Based on our dataset, we classify the user activities in each frame and use three latent fluents of the user, which change over time and are associated with activities, to measure the healthy degree of the user’s lifestyle. Experimental results show that our method can be used to analyze the healthiness of users’ lifestyles.

Denoising of time domain data is a crucial task for many applications such as communication, translation, virtual assistants etc. For this task, a combination of a recurrent neural net (RNNs) with a Denoising Auto-Encoder (DAEs) has shown promising results. However, this combined model is challenged when operating with low signal-to-noise ratio (SNR) data embedded in non-Gaussian and non-stationary noise. To address this issue, we design a novel model, referred to as `Enhanced Deep Recurrent Denoising Auto-Encoder' (EDR-DAE), that incorporates a signal amplifier layer, and applies curriculum learning by first denoising high SNR signals, before gradually decreasing the SNR until the signals become noise dominated. We showcase the performance of EDR-DAE using time-series data that describes gravitational waves embedded in very noisy backgrounds. In addition, we show that EDRDAE can accurately denoise signals whose topology is significantly more complex than those used for training, demonstrating that our model generalizes to new classes of gravitational waves that are beyond the scope of established denoising algorithms.