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Nelly Sélem-Mojica

dblp:35/8088 · DBLP profile ↗
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3ranked-venue papers
2as first author
3since 2021 · last 2025
0000-0003-1697-3862ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 3 · 2 first-author · 3 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
3 papers
Computing education · 51% Bioinformatics and computational biology · 49%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
genomics
0.912025
FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis · Bioinform. 2025
Bioinformatics and computational biology › genomics
variant analysis
0.912025
FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis · Bioinform. 2025
Computing education › STEM education
bioinformatics education
0.522025
An educator framework for organizing Wikipedia editathons for computational biology · Bioinform. 2025
Closing the computational biology 'knowledge gap': Spanish Wikipedia as a case study · Bioinform. 2024
Bioinformatics and computational biology › genomics
pathogen genomics
0.312025
FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis · Bioinform. 2025

Methods — techniques the papers use, named apart from their topics

web tool · 0.9network clustering · 0.9SNP detection · 0.9quantitative analysis · 0.8qualitative analysis · 0.8
YearPublicationVenuePosition
2025 FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis
abstract
MOTIVATION: Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), still claims around 1.25 million lives each year. The growing threat of drug resistance-often driven by single‑nucleotide polymorphisms (SNPs) in Mtb genomes underscores the need for high‑quality genomic data and powerful bioinformatics tools. We present FuNTB, a python‑based pipeline that detects non‑synonymous SNPs in Mtb and builds functional network clusters to reveal genotype-phenotype relationships. RESULTS: FuNTB profiles non‑synonymous SNPs at the gene level across user‑defined phenotypes, pinpointing both shared and unique mutations. It ingests annotated Variant Call Format (VCF) files or MTBseq outputs and merges them with clinical metadata to produce network‑XML files compatible with Cytoscape and Gephi. When applied to the CRyPTIC Mtb collection, FuNTB rapidly recovered established resistance genes and surfaced novel candidates, validating its utility for mapping genotype-phenotype associations. AVAILABILITY AND IMPLEMENTATION: FuNTB is implemented in Python 3.8+ and is freely available under the MIT license at https://doi.org/10.5281/zenodo.15399917.
Axel Alejandro Ramos García, Paulina M. Mejía-Ponce, Nelly Sélem-Mojica, Alejandro Santos-Díaz, Emmanuel Martínez 0001, Cuauhtémoc Licona Cassani
Bioinform.3
2025 An educator framework for organizing Wikipedia editathons for computational biology
abstract
MOTIVATION: Wikipedia is a vital open educational resource in computational biology; however, a significant knowledge gap exists between English and non-English Wikipedias. Reducing this knowledge gap via intensive editing events, or "editathons," would be beneficial in reducing language barriers that disadvantage learners whose native language is not English. Results: We present a framework to guide educators in organizing editathons for learners to improve and create relevant Wikipedia articles. As a case study, we present the results of an editathon held at the 2024 ISCB Latin America conference, in which ten new articles were created for the Spanish-language edition of Wikipedia. We also present a web tool, "compbio-on-wiki," which identifies relevant English Wikipedia articles missing in other languages. We demonstrate the value of editathons to expand the accessibility and visibility of computational biology content in multiple languages. AVAILABILITY AND IMPLEMENTATION: Source code for the compbio-on-wiki Toolforge site is available at: https://github.com/lubianat/compbio-on-wiki.
Nelly Sélem-Mojica, Tiago Lubiana, Antonio Hermoso, Aarón Gallego-Crespo, Tülay Karakulak, Megha Hegde, Nicolas C. Näpflin, Audra Anjum, Pradeep Eranti, Dan F. DeBlasio, Jorge Noé García-Chávez, Cynthia Paola Rangel-Chávez, Divanery Rodriguez-Gomez, Varinia López-Ramírez, Juan Vázquez-Martínez, Lonnie R. Welch, Alastair M. Kilpatrick, Farzana Rahman
Bioinform.1
2024 Closing the computational biology 'knowledge gap': Spanish Wikipedia as a case study
abstract
MOTIVATION: Wikipedia is a vital open educational resource in computational biology. The quality of computational biology coverage in English-language Wikipedia has improved steadily in recent years. However, there is an increasingly large 'knowledge gap' between computational biology resources in English-language Wikipedia, and Wikipedias in non-English languages. Reducing this knowledge gap by providing educational resources in non-English languages would reduce language barriers which disadvantage non-native English speaking learners across multiple dimensions in computational biology. RESULTS: Here, we provide a comprehensive assessment of computational biology coverage in Spanish-language Wikipedia, the second most accessed Wikipedia worldwide. Using Spanish-language Wikipedia as a case study, we generate quantitative and qualitative data before and after a targeted educational event, specifically, a Spanish-focused student editing competition. Our data demonstrates how such events and activities can narrow the knowledge gap between English and non-English educational resources, by improving existing articles and creating new articles. Finally, based on our analysis, we suggest ways to prioritize future initiatives to improve open educational resources in other languages. AVAILABILITY AND IMPLEMENTATION: Scripts for data analysis are available at: https://github.com/ISCBWikiTeam/spanish.
Nelly Sélem-Mojica, Tülay Karakulak, Audra Anjum, Anton Pashkov, Rafael Pérez-Estrada, Karina Enriquez-Guillén, Dan F. DeBlasio, Sofia Ferreira-Gonzalez, Alejandra Medina-Rivera, Daniel Rodrigo-Torres, Alastair M. Kilpatrick, Lonnie R. Welch, Farzana Rahman
Bioinform.1