Demo Data from EDBT 2026 / reviewers in the wild / expert
Het Barot
dblp:358/4875
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · unresolved
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 3 heaviest of 3, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics |
0.8 | 1 | 2024 | SpatialOne: end-to-end analysis of visium data at scale · Bioinform. 2024 |
Bioinformatics and computational biology › gene expression analysis
gene expression quantification |
0.2 | 1 | 2024 | SpatialOne: end-to-end analysis of visium data at scale · Bioinform. 2024 |
Bioinformatics and computational biology
transcriptomics |
0.2 | 1 | 2024 | SpatialOne: end-to-end analysis of visium data at scale · Bioinform. 2024 |
Methods — techniques the papers use, named apart from their topics
deconvolution · 0.8cell segmentation · 0.8
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2024 | SpatialOne: end-to-end analysis of visium data at scaleabstractMOTIVATION: Spatial transcriptomics allow to quantify mRNA expression within the spatial context. Nonetheless, in-depth analysis of spatial transcriptomics data remains challenging and difficult to scale due to the number of methods and libraries required for that purpose. RESULTS: Here we present SpatialOne, an end-to-end pipeline designed to simplify the analysis of 10x Visium data by combining multiple state-of-the-art computational methods to segment, deconvolve, and quantify spatial information; this approach streamlines the analysis of reproducible spatial-data at scale. AVAILABILITY AND IMPLEMENTATION: SpatialOne source code and execution examples are available at https://github.com/Sanofi-Public/spatialone-pipeline, experimental data is available at https://zenodo.org/records/12605154. SpatialOne is distributed as a docker container image. Mena Soliman Asaad Kamel, Amrut Sarangi, Pavel Senin, Sergio Villordo, Sunaal Mathew, Het Barot, Seqian Wang, Ana Solbas, Luis Cano Ayestas, Marion Classe, Ziv Bar-Joseph, Albert Pla |
Bioinform. | 6 |