Gorkem Durak

dblp:365/4465 · DBLP profile ↗
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11ranked-venue papers
0as first author
11since 2021 · last 2026
0000-0002-1608-1955ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Graphics, computer vision, multimedia, augmented reality and games · 6 · 6 since 2021Applied, interdisciplinary, general and emerging computing · 6 · 6 since 2021Human-computer interaction and ubiquitous computing · 2 · 2 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021
YearPublicationVenuePosition
2026 GazeVaLM: A Multi-Observer Eye-Tracking Benchmark for Evaluating Clinical Realism in AI-Generated X-Rays
abstract
We introduce GazeVaLM, a public eye-tracking dataset for studying clinical perception during chest radiograph authenticity assessment. The dataset comprises 960 gaze recordings from 16 expert radiologists interpreting 30 real and 30 synthetic chest X-rays (generated by diffusion based generative AI) under two conditions: diagnostic assessment and real-fake classification (Visual Turing test). For each image–observer pair, we provide raw gaze samples, fixation maps, scanpaths, saliency density maps, structured diagnostic labels, and authenticity judgments. We extend the protocol to 6 state-of-the-art multimodal LLMs, releasing their predicted diagnoses, authenticity labels, and confidence scores under matched conditions — enabling direct human–AI comparison at both decision and uncertainty levels. We further provide analyses of gaze agreement, inter-observer consistency, and benchmarking of radiologists versus LLMs in diagnostic accuracy and authenticity detection. GazeVaLM supports research in gaze modeling, clinical decision-making, human–AI comparison, generative image realism assessment, and uncertainty quantification. By jointly releasing visual attention data, clinical labels, and model predictions, we aim to facilitate reproducible research on how experts and AI systems perceive, interpret, and evaluate medical images. The dataset is available at https://huggingface.co/datasets/davidcwong/GazeVaLM.
David C. Wong 0005, Zeynep Isik, Bin Wang 0068, Marouane Tliba, Gorkem Durak, Elif Keles, Halil Ertugrul Aktas, Aladine Chetouani, Cagdas Topel, Nicolo Gennaro, Camila Lopes Vendrami, Tugce Agirlar Trabzonlu, Amir Ali Rahsepar, Laetitia Perronne, Matthew Antalek, Onural Ozturk, Gokcan Okur, Andrew C. Gordon, Ayis Pyrros, Frank H. Miller, Amir Borhani, Hatice Savas, Eric M. Hart, Elizabeth A. Krupinski, Ulas Bagci
ETRA5
2026 AdverIN: Monotonic adversarial intensity attack for domain generalization in medical image segmentation
Zheyuan Zhang 0001, Bin Wang 0068, Lanhong Yao, Elif Keles, Debesh Jha, Matthew Antalek, Gorkem Durak, Alpay Medetalibeyoglu, Concetto Spampinato, Baris Turkbey, Boqing Gong, Ulas Bagci
Medical Image Anal.7
2026 VHU-Net: Variational hadamard U-Net for body MRI bias field correction
Xin Zhu 0005, A. Enis Çetin, Gorkem Durak, Batuhan Gündogdu, Ziliang Hong, Hongyi Pan, Halil Ertugrul Aktas, Elif Keles, Hatice Savas, Aytekin Oto, Hiten D. Patel, Adam B. Murphy, Ashley Ross, Frank H. Miller, Baris Turkbey, Ulas Bagci
Medical Image Anal.3
2026 REN: Anatomically-Informed Mixture-of-Experts for Interstitial Lung Disease Diagnosis
abstract
Mixture-of-Experts (MoE) architectures achieve scalable learning by routing inputs to specialized subnetworks through conditional computation. However, conventional MoE designs assume homogeneous expert capability and domain-agnostic routing-assumptions that are fundamentally misaligned with medical imaging, where anatomical structure and regional disease heterogeneity govern pathological patterns. We introduce Regional Expert Networks (REN), the first anatomically-informed MoE framework for medical image classification. REN encodes anatomical priors by training seven specialized experts, each dedicated to a distinct lung lobe or bilateral lung combination, enabling precise modeling of region-specific pathological variation. Multi-modal gating mechanisms dynamically integrate radiomics biomarkers with deep learning (DL) features extracted by convolutional (CNN), Transformer (ViT), and state-space (Mamba) architectures to weight expert contributions at inference. Applied to interstitial lung disease (ILD) classification on a 597-patient, 1,898-scan longitudinal cohort, REN achieves consistently superior performance: the radiomics-guided ensemble attains an average AUC of $0.8646~\pm ~0.0467$ , a +12.5% improvement over the SwinUNETR single-model baseline (AUC 0.7685, ${p}={0}.{031}$ ). Lower-lobe experts reach AUCs of 0.88-0.90, outperforming DL baselines (CNN: 0.76-0.79) and mirroring known patterns of basal ILD progression. Evaluated under rigorous patient-level cross-validation, REN demonstrates strong generalizability and clinical interpretability, establishing a scalable, anatomically-guided framework potentially extensible to other structured medical imaging tasks. Code is available on our GitHub https://github.com/NUBagciLab/MoE-REN.
Alec Peltekian, Halil Ertugrul Aktas, Gorkem Durak, Kevin M. Grudzinski, Bradford C. Bemiss, Carrie Richardson, Jane E. Dematte, G. R. Scott Budinger, Anthony J. Esposito, Alexander V. Misharin, Alok N. Choudhary, Ankit Agrawal 0001, Ulas Bagci
IEEE Trans. Medical Imaging3
2025 Shifts in Doctors' Eye Movements Between Real and AI-Generated Medical Images
David C. Wong 0005, Bin Wang 0068, Gorkem Durak, Marouane Tliba, Mohamed Amine Kerkouri, Aladine Chetouani, A. Enis Çetin, Cagdas Topel, Nicolo Gennaro, Camila Lopes Vendrami, Tugce Agirlar Trabzonlu, Amir Ali Rahsepar, Laetitia Perronne, Matthew Antalek, Onural Ozturk, Gokcan Okur, Andrew C. Gordon, Ayis Pyrros, Frank H. Miller, Amir Borhani, Hatice Savas, Eric M. Hart, Elizabeth A. Krupinski, Ulas Bagci
ETRA3
2025 MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation
abstract
Accurate segmentation of organs from abdominal CT scans is essential for clinical applications such as diagnosis, treatment planning, and patient monitoring. To handle challenges of heterogeneity in organ shapes, sizes, and complex anatomical relationships, we propose a Multi decoder network (MDNet), an encoder-decoder network that uses the pre-trained MiT-B2 as the encoder and multiple different decoder networks. Each decoder network is connected to a different part of the encoder via a multi-scale feature enhancement dilated block. With each decoder, we increase the depth of the network iteratively and refine segmentation masks, enriching feature maps by integrating previous decoders’ feature maps. To refine the feature map further, we also utilize the predicted masks from the previous decoder to the current decoder to provide spatial attention across foreground and background regions. MDNet effectively refines the segmentation mask with a high dice similarity coefficient (DSC) of 0.9013 and 0.9169 on the Liver Tumor segmentation (LiTS) and MSD Spleen datasets. Additionally, it reduces Hausdorff distance (HD) to 3.79 for the LiTS dataset and 2.26 for the spleen segmentation dataset, underscoring the precision of MDNet in capturing the complex contours. Moreover, MDNet is more interpretable and robust compared to the other baseline models. The code for our architecture is available at https://github.com/DebeshJha/MDNet.
Debesh Jha, Nikhil Kumar Tomar, Koushik Biswas, Gorkem Durak, Matthew Antalek, Zheyuan Zhang 0001, Bin Wang 0068, Md Mostafijur Rahman, Hongyi Pan, Alpay Medetalibeyoglu, Vandan Gorade, Yury Velichko, Daniela P. Ladner, Amir Borhani, Ulas Bagci
ICASSP4
2025 ViCTr: Vital Consistency Transfer for Pathology Aware Image Synthesis
abstract
Synthesizing medical images remains challenging due to limited annotated pathological data, modality domain gaps, and the complexity of representing diffuse pathologies such as liver cirrhosis. Existing methods often struggle to maintain anatomical fidelity while accurately modeling pathological features, frequently relying on priors derived from natural images or inefficient multi-step sampling. In this work, we introduce ViCTr (Vital Consistency Transfer), a novel two-stage framework that combines a rectified flow trajectory with a Tweedie-corrected diffusion process to achieve high-fidelity, pathology-aware image synthesis. First, we pretrain ViCTr on the ATLAS-8k dataset using Elastic Weight Consolidation (EWC) to preserve critical anatomical structures. We then fine-tune the model adversarially with Low-Rank Adaptation (LoRA) modules for precise control over pathology severity. By reformulating Tweedie's formula within a linear trajectory framework, ViCTr supports one-step sampling, reducing inference from 50 steps to just 4, without sacrificing anatomical realism. We evaluate ViCTr on BTCV (CT), AMOS (MRI), and CirrMRI600+ (cirrhosis) datasets. Results demonstrate state-of-the-art performance, achieving a Medical Frechet Inception Distance (MFID) of 17.01 for cirrhosis synthesis 28% lower than existing approaches and improving nnUNet segmentation by +3.8% mDSC when used for data augmentation. Radiologist reviews indicate that ViCTr-generated liver cirrhosis MRIs are clinically indistinguishable from real scans. To our knowledge, ViCTr is the first method to provide fine-grained, pathology-aware MRI synthesis with graded severity control, closing a critical gap in AI-driven medical imaging research.
Onkar Susladkar, Gayatri Deshmukh, Yalcin Tur, Gorkem Durak, Ulas Bagci
ICCV4
2025 Uncertainty-Guided Cross Attention Ensemble Mean Teacher for Semi-Supervised Medical Image Segmentation
abstract
This work proposes a novel framework, UncertaintyGuided Cross Attention Ensemble Mean Teacher (UGCEMT), for achieving state-of-the-art performance in semisupervised medical image segmentation. UG-CEMT leverages the strengths of co-training and knowledge distillation by combining a Cross-attention Ensemble Mean Teacher framework (CEMT) inspired by Vision Transformers (ViT) with uncertainty-guided consistency regularization and Sharpness-Aware Minimization emphasizing uncertainty. UG-CEMT improves semi-supervised performance while maintaining a consistent network architecture and task setting by fostering high disparity between sub-networks. Experiments demonstrate significant advantages over existing methods like Mean Teacher and Crosspseudo Supervision in terms of disparity, domain generalization, and medical image segmentation performance. UG-CEMT achieves state-of-the-art results on multi-center prostate MRI and cardiac MRI datasets, where object segmentation is particularly challenging. Our results show that using only 10% labeled data, UG-CEMT approaches the performance of fully supervised methods, demonstrating its effectiveness in exploiting unlabeled data for robust medical image segmentation. The code is publicly available at https://github.com/Meghnak13/UG-CEMT
Meghana Karri, Amit Soni Arya, Koushik Biswas, Nicolo Gennaro, Vedat Cicek, Gorkem Durak, Yuri S. Velichko, Ulas Bagci
WACV6
2025 Large-scale multi-center CT and MRI segmentation of pancreas with deep learning
abstract
Automated volumetric segmentation of the pancreas on cross-sectional imaging is needed for diagnosis and follow-up of pancreatic diseases. While CT-based pancreatic segmentation is more established, MRI-based segmentation methods are understudied, largely due to a lack of publicly available datasets, benchmarking research efforts, and domain-specific deep learning methods. In this retrospective study, we collected a large dataset (767 scans from 499 participants) of T1-weighted (T1 W) and T2-weighted (T2 W) abdominal MRI series from five centers between March 2004 and November 2022. We also collected CT scans of 1,350 patients from publicly available sources for benchmarking purposes. We introduced a new pancreas segmentation method, called PanSegNet , combining the strengths of nnUNet and a Transformer network with a new linear attention module enabling volumetric computation. We tested PanSegNet ’s accuracy in cross-modality (a total of 2,117 scans) and cross-center settings with Dice and Hausdorff distance (HD95) evaluation metrics. We used Cohen’s kappa statistics for intra and inter-rater agreement evaluation and paired t-tests for volume and Dice comparisons, respectively. For segmentation accuracy, we achieved Dice coefficients of 88.3% (±7.2%, at case level) with CT, 85.0% (±7.9%) with T1 W MRI, and 86.3% (±6.4%) with T2 W MRI. There was a high correlation for pancreas volume prediction with R 2 of 0.91, 0.84, and 0.85 for CT, T1 W, and T2 W, respectively. We found moderate inter-observer (0.624 and 0.638 for T1 W and T2 W MRI, respectively) and high intra-observer agreement scores. All MRI data is made available at https://osf.io/kysnj/ . Our source code is available at https://github.com/NUBagciLab/PaNSegNet . • We develop a first-ever cross-platform compatible (T1 W, T2 W, and CT) pancreas segmentation tool, named PanSegNet . • PaNSegNet has innovative “linear self-attention” blocks to reduce computational cost significantly while operating on 3D. • We shared our both source code and multi-center multi-contrast MRI datasets with ground truths. • PaNSegNet underwent rigorous validation, including cross-domain and multi-center comparisons between CT and MRI scans.
Zheyuan Zhang 0001, Elif Keles, Gorkem Durak, Yavuz Taktak, Onkar Susladkar, Vandan Gorade, Debesh Jha, Asli C. Ormeci, Alpay Medetalibeyoglu, Lanhong Yao, Bin Wang 0068, Ilkin Isler, Linkai Peng, Hongyi Pan, Camila Lopes Vendrami, Amir Bourhani, Yury Velichko, Boqing Gong, Concetto Spampinato, Ayis Pyrros, Pallavi Tiwari, Derk C. F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan, Emil Agarunov, Nassier Harfouch, Chenchan Huang, Marco J. Bruno, Ivo Schoots, Rajesh Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Baris Turkbey, Michael B. Wallace, Ulas Bagci
Medical Image Anal.3
2025 DiffBoost: Enhancing Medical Image Segmentation via Text-Guided Diffusion Model
abstract
Large-scale, big-variant, high-quality data are crucial for developing robust and successful deep-learning models for medical applications since they potentially enable better generalization performance and avoid overfitting. However, the scarcity of high-quality labeled data always presents significant challenges. This paper proposes a novel approach to address this challenge by developing controllable diffusion models for medical image synthesis, called DiffBoost. We leverage recent diffusion probabilistic models to generate realistic and diverse synthetic medical image data that preserve the essential characteristics of the original medical images by incorporating edge information of objects to guide the synthesis process. In our approach, we ensure that the synthesized samples adhere to medically relevant constraints and preserve the underlying structure of imaging data. Due to the random sampling process by the diffusion model, we can generate an arbitrary number of synthetic images with diverse appearances. To validate the effectiveness of our proposed method, we conduct an extensive set of medical image segmentation experiments on multiple datasets, including Ultrasound breast (+13.87%), CT spleen (+0.38%), and MRI prostate (+7.78%), achieving significant improvements over the baseline segmentation methods. The promising results demonstrate the effectiveness of our DiffBoost for medical image segmentation tasks and show the feasibility of introducing a first-ever text-guided diffusion model for general medical image segmentation tasks. With carefully designed ablation experiments, we investigate the influence of various data augmentations, hyper-parameter settings, patch size for generating random merging mask settings, and combined influence with different network architectures. Source code with checkpoints are available at https://github.com/NUBagciLab/DiffBoost.
Zheyuan Zhang 0001, Lanhong Yao, Bin Wang 0068, Debesh Jha, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Ulas Bagci
IEEE Trans. Medical Imaging5
2024 Adaptive Smooth Activation Function for Improved Organ Segmentation and Disease Diagnosis
Koushik Biswas, Debesh Jha, Nikhil Kumar Tomar, Meghana Karri, Amit Reza, Gorkem Durak, Alpay Medetalibeyoglu, Matthew Antalek, Yury Velichko, Daniela P. Ladner, Amir Borhani, Ulas Bagci
MICCAI (9)6