Demo Data from EDBT 2026 / reviewers in the wild / expert
Diego Mañanes
dblp:369/7020
· DBLP profile ↗
1ranked-venue papers
1as first author
1since 2021 · last 2024
—ORCID · unresolved
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › omics data analysis
cell-type deconvolution |
0.8 | 1 | 2024 | SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks · Bioinform. 2024 |
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics |
0.8 | 1 | 2024 | SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks · Bioinform. 2024 |
Methods — techniques the papers use, named apart from their topics
simulation of mixed profiles · 0.8fully connected neural network · 0.8
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2024 | SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networksabstractSUMMARY: Spatial transcriptomics has changed our way to study tissue structure and cellular organization. However, there are still limitations in its resolution, and most available platforms do not reach a single cell resolution. To address this issue, we introduce SpatialDDLS, a fast neural network-based algorithm for cell type deconvolution of spatial transcriptomics data. SpatialDDLS leverages single-cell RNA sequencing data to simulate mixed transcriptional profiles with predefined cellular composition, which are subsequently used to train a fully connected neural network to uncover cell type diversity within each spot. By comparing it with two state-of-the-art spatial deconvolution methods, we demonstrate that SpatialDDLS is an accurate and fast alternative to the available state-of-the art tools. AVAILABILITY AND IMPLEMENTATION: The R package SpatialDDLS is available via CRAN-The Comprehensive R Archive Network: https://CRAN.R-project.org/package=SpatialDDLS. A detailed manual of the main functionalities implemented in the package can be found at https://diegommcc.github.io/SpatialDDLS. Diego Mañanes, Inés Rivero-García, Carlos Relaño, David Sancho, Daniel Jimenez-Carretero, Carlos Torroja Fungairino, Fátima Sánchez-Cabo |
Bioinform. | 1 |