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Diego Mañanes

dblp:369/7020 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › omics data analysis
cell-type deconvolution
0.812024
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks · Bioinform. 2024
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics
0.812024
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks · Bioinform. 2024

Methods — techniques the papers use, named apart from their topics

simulation of mixed profiles · 0.8fully connected neural network · 0.8
YearPublicationVenuePosition
2024 SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks
abstract
SUMMARY: Spatial transcriptomics has changed our way to study tissue structure and cellular organization. However, there are still limitations in its resolution, and most available platforms do not reach a single cell resolution. To address this issue, we introduce SpatialDDLS, a fast neural network-based algorithm for cell type deconvolution of spatial transcriptomics data. SpatialDDLS leverages single-cell RNA sequencing data to simulate mixed transcriptional profiles with predefined cellular composition, which are subsequently used to train a fully connected neural network to uncover cell type diversity within each spot. By comparing it with two state-of-the-art spatial deconvolution methods, we demonstrate that SpatialDDLS is an accurate and fast alternative to the available state-of-the art tools. AVAILABILITY AND IMPLEMENTATION: The R package SpatialDDLS is available via CRAN-The Comprehensive R Archive Network: https://CRAN.R-project.org/package=SpatialDDLS. A detailed manual of the main functionalities implemented in the package can be found at https://diegommcc.github.io/SpatialDDLS.
Diego Mañanes, Inés Rivero-García, Carlos Relaño, David Sancho, Daniel Jimenez-Carretero, Carlos Torroja Fungairino, Fátima Sánchez-Cabo
Bioinform.1