Demo Data from EDBT 2026 / reviewers in the wild / expert
Megan Davey
dblp:370/4694
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2023
0000-0003-0194-9229ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 4 heaviest of 4, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
genomics |
0.7 | 1 | 2023 | nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing · Bioinform. 2023 |
Bioinformatics and computational biology › transcriptomics › transcript isoform analysis
isoform annotation |
0.7 | 1 | 2023 | nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing · Bioinform. 2023 |
Bioinformatics and computational biology › transcriptomics
transcriptome annotation |
0.7 | 1 | 2023 | nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing · Bioinform. 2023 |
Bioinformatics and computational biology › sequence analysis
long-read sequencing |
0.2 | 1 | 2023 | nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing · Bioinform. 2023 |
Methods — techniques the papers use, named apart from their topics
iso-seq · 0.7
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2023 | nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencingabstractMOTIVATION: Iso-Seq RNA long-read sequencing enables the identification of full-length transcripts and isoforms, removing the need for complex analysis such as transcriptome assembly. However, the raw sequencing data need to be processed in a series of steps before annotation is complete. Here, we present nf-core/isoseq, a pipeline for automatic read processing and genome annotation. Following nf-core guidelines, the pipeline has few dependencies and can be run on any of platforms. AVAILABILITY AND IMPLEMENTATION: The pipeline is freely available online on the nf-core website (https://nf-co.re/isoseq) and on GitHub (https://github.com/nf-core/isoseq) under MIT License (DOI: 10.5281/zenodo.7116979). Sébastien Guizard, Katarzyna Miedzinska, Jacqueline Smith, Richard I. Kuo, Megan Davey, Alan L. Archibald, Mick Watson |
Bioinform. | 6 |