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Maria Rosenthal

dblp:370/5007 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2023
0000-0003-2986-936XORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein analysis
protein-protein interaction		 0.712023
AlphaPulldown - a python package for protein-protein interaction screens using AlphaFold-Multimer · Bioinform. 2023
Bioinformatics and computational biology › protein structure prediction
protein complex structure prediction		 0.212023
AlphaPulldown - a python package for protein-protein interaction screens using AlphaFold-Multimer · Bioinform. 2023

Methods — techniques the papers use, named apart from their topics

confidence scoring · 0.7alphafold-multimer · 0.7
YearPublicationVenuePosition
2023 AlphaPulldown - a python package for protein-protein interaction screens using AlphaFold-Multimer
abstract
SUMMARY: The artificial intelligence-based structure prediction program AlphaFold-Multimer enabled structural modelling of protein complexes with unprecedented accuracy. Increasingly, AlphaFold-Multimer is also used to discover new protein-protein interactions (PPIs). Here, we present AlphaPulldown, a Python package that streamlines PPI screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer. It provides a convenient command-line interface, a variety of confidence scores and a graphical analysis tool. AVAILABILITY AND IMPLEMENTATION: AlphaPulldown is freely available at https://www.embl-hamburg.de/AlphaPulldown. SUPPLEMENTARY INFORMATION: Supplementary note is available at Bioinformatics online.
Dingquan Yu, Grzegorz Chojnowski, Maria Rosenthal, Jan Kosinski
 Bioinform.3