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Joo Sang Lee

dblp:372/1386 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 87% Medical and health informatics · 13%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › transcriptomics › spatial transcriptomics
spatial gene expression prediction
0.812024
Accurate Spatial Gene Expression Prediction by Integrating Multi-Resolution Features · CVPR 2024
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics
0.812024
Accurate Spatial Gene Expression Prediction by Integrating Multi-Resolution Features · CVPR 2024
Medical and health informatics › oncology
cancer diagnosis
0.212024
Accurate Spatial Gene Expression Prediction by Integrating Multi-Resolution Features · CVPR 2024

Methods — techniques the papers use, named apart from their topics

multi-resolution feature fusion · 0.8deep learning · 0.8
YearPublicationVenuePosition
2024 Accurate Spatial Gene Expression Prediction by Integrating Multi-Resolution Features
abstract
Recent advancements in Spatial Transcriptomics (ST) technology have facilitated detailed gene expression anal-ysis within tissue contexts. However, the high costs and methodological limitations of ST necessitate a more ro-bust predictive model. In response, this paper introduces TRIPLEX, a novel deep learning framework designed to predict spatial gene expression from Whole Slide Images (WSIs). TRIPLEX uniquely harnesses multi-resolution features, capturing cellular morphology at individual spots, the local context around these spots, and the global tissue organization. By integrating these features through an ef-fective fusion strategy, TRIPLEX achieves accurate gene ex-pression prediction. Our comprehensive benchmark study, conducted on three public ST datasets and supplemented with Visium data from 10X Genomics, demonstrates that TRIPLEX outperforms current state-of-the-art models in Mean Squared Error (MSE), Mean Absolute Error (MAE), and Pearson Correlation Coefficient (PCC). The model's predictions align closely with ground truth gene expression profiles and tumor annotations, underscoring TRIPLEX's potential in advancing cancer diagnosis and treatment.
Youngmin Chung, Ji Hun Ha, Kyeong Chan Im, Joo Sang Lee
CVPR4