Adibvafa Fallahpour

dblp:378/2070 · DBLP profile ↗
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4ranked-venue papers
2as first author
4since 2021 · last 2025
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 3 · 2 first-author · 3 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
2 papers
Vision and language · 50% Question answering and dialogue systems · 25% Language models and text generation · 25%
Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 67% Medical and health informatics · 33%

Topics — the 7 heaviest of 7, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Natural language and speech › Language models and text generation
LLM agents
0.912025
MedRAX: Medical Reasoning Agent for Chest X-ray · ICML 2025
Computer vision › Vision and language › visual question answering
medical visual question answering
0.912025
MedRAX: Medical Reasoning Agent for Chest X-ray · ICML 2025
Natural language and speech › Question answering and dialogue systems
multimodal question answering
0.912025
MedRAX: Medical Reasoning Agent for Chest X-ray · ICML 2025
Computer vision › Vision and language
multimodal reasoning
0.912025
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model · NeurIPS 2025
Medical and health informatics
clinical decision support
0.912025
MedRAX: Medical Reasoning Agent for Chest X-ray · ICML 2025
Bioinformatics and computational biology › sequence analysis
genomic sequence analysis
0.912025
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model · NeurIPS 2025
Bioinformatics and computational biology › statistical genetics
variant effect prediction
0.912025
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model · NeurIPS 2025

Methods — techniques the papers use, named apart from their topics

tool integration · 1.7supervised fine-tuning · 1.7reinforcement learning · 1.7multimodal large language model · 1.7DNA foundation model · 1.7
YearPublicationVenuePosition
2025 MedRAX: Medical Reasoning Agent for Chest X-ray
abstract
Chest X-rays (CXRs) play an integral role in driving critical decisions in disease management and patient care. While recent innovations have led to specialized models for various CXR interpretation tasks, these solutions often operate in isolation, limiting their practical utility in clinical practice. We present MedRAX, the first versatile AI agent that seamlessly integrates state-of-the-art CXR analysis tools and multimodal large language models into a unified framework. MedRAX dynamically leverages these models to address complex medical queries without requiring additional training. To rigorously evaluate its capabilities, we introduce ChestAgentBench, a comprehensive benchmark containing 2,500 complex medical queries across 7 diverse categories. Our experiments demonstrate that MedRAX achieves state-of-the-art performance compared to both open-source and proprietary models, representing a significant step toward the practical deployment of automated CXR interpretation systems. Data and code have been publicly available at https://github.com/bowang-lab/MedRAX
Adibvafa Fallahpour, Jun Ma 0016, Alif Munim, Hongwei Lyu, Bo Wang 0044
ICML1
2025 Advancing Medical Representation Learning Through High-Quality Data
Negin Baghbanzadeh, Adibvafa Fallahpour, Yasaman Parhizkar, Franklin Ogidi, Shuvendu Roy, Sajad Ashkezari, Vahid Reza Khazaie, Michael Colacci, Ali Etemad, Arash Afkanpour, Elham Dolatabadi
MICCAI (13)2
2025 BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
abstract
Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel at representing sequences, they struggle with multi-step reasoning and lack transparent, biologically meaningful explanations. BioReason addresses this by tightly integrating a DNA foundation model with a large language model (LLM), enabling the LLM to directly interpret and reason over genomic information. Through supervised fine-tuning and reinforcement learning, BioReason learns to produce logical, biologically coherent deductions. It achieves major performance gains, boosting KEGG-based disease pathway prediction accuracy from 86% to 98% and improving variant effect prediction by an average of 15% over strong baselines. BioReason can reason over unseen biological entities and explain its decisions step by step, offering a transformative framework for interpretable, mechanistic AI in biology. All data, code, and checkpoints are available at [https://github.com/bowang-lab/BioReason](https://github.com/bowang-lab/BioReason).
Adibvafa Fallahpour, Andrew Magnuson, Purav Gupta, Shihao Ma, Jack Naimer, Arnav Shah, Haonan Duan 0002, Omar Ibrahim, Hani Goodarzi, Chris J. Maddison, Bo Wang 0044
NeurIPS1
2025 An Investigation of Memorization Risk in Healthcare Foundation Models
abstract
Foundation models trained on large-scale de-identified electronic health records (EHRs) hold promise for clinical applications. However, their capacity to memorize patient information raises important privacy concerns. In this work, we introduce a suite of black-box evaluation tests to assess privacy-related memorization risks in foundation models trained on structured EHR data. Our framework includes methods for probing memorization at both the embedding and generative levels, and aims to distinguish between model generalization and harmful memorization in clinically relevant settings. We contextualize memorization in terms of its potential to compromise patient privacy, particularly for vulnerable subgroups. We validate our approach on a publicly available EHR foundation model and release an open-source toolkit to facilitate reproducible and collaborative privacy assessments in healthcare AI.
Sana Tonekaboni, Lena Stempfle, Adibvafa Fallahpour, Walter Gerych, Marzyeh Ghassemi
NeurIPS3