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Hyun Joo Ro

dblp:378/5511 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Artificial intelligence
1 paper
Generative modeling · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Generative modeling
latent space optimization
0.812024
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space · ICML 2024
Bioinformatics and computational biology
protein engineering
0.812024
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space · ICML 2024
Bioinformatics and computational biology › protein design
protein fitness optimization
0.812024
Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space · ICML 2024

Methods — techniques the papers use, named apart from their topics

reinforcement learning · 1.5protein language model · 1.5encoder-decoder · 1.5
YearPublicationVenuePosition
2024 Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
abstract
Proteins are complex molecules responsible for different functions in nature. Enhancing the functionality of proteins and cellular fitness can significantly impact various industries. However, protein optimization using computational methods remains challenging, especially when starting from low-fitness sequences. We propose LatProtRL, an optimization method to efficiently traverse a latent space learned by an encoder-decoder leveraging a large protein language model. To escape local optima, our optimization is modeled as a Markov decision process using reinforcement learning acting directly in latent space. We evaluate our approach on two important fitness optimization tasks, demonstrating its ability to achieve comparable or superior fitness over baseline methods. Our findings and in vitro evaluation show that the generated sequences can reach high-fitness regions, suggesting a substantial potential of LatProtRL in lab-in-the-loop scenarios.
Luiz Felipe Vecchietti, Hyunkyu Jung, Hyun Joo Ro, Meeyoung Cha, Ho Min Kim
ICML4