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Yixuan Si

dblp:382/6530 · DBLP profile ↗
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6ranked-venue papers
0as first author
6since 2021 · last 2026
0009-0007-2903-5345ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 4 · 4 since 2021Graphics, computer vision, multimedia, augmented reality and games · 3 · 3 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
4 papers
Medical and health informatics · 86% Computational science and engineering · 14%
Artificial intelligence
4 papers
Vision and language · 34% 3D vision · 30% Image recognition and object detection · 17%

Topics — the 12 heaviest of 14, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Medical and health informatics
computational pathology
2.632025
CPathAgent: An Agent-based Foundation Model for Interpretable High-Resolution Pathology Image Analysis Mimicking Pathologists' Diagnostic Logic · NeurIPS 2025
PathGen-1.6M: 1.6 Million Pathology Image-text Pairs Generation through Multi-agent Collaboration · ICLR 2025
CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology · CVPR 2025
Computer vision › Vision and language › vision-language model
multimodal large language model
0.912025
CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology · CVPR 2025
Computer vision › Image recognition and object detection › medical image analysis
whole slide image analysis
0.912025
CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology · CVPR 2025
Computational science and engineering › multimodal learning
multimodal foundation model
0.912025
CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology · CVPR 2025
Medical and health informatics › computational pathology
pathology vision-language model
0.912025
PathGen-1.6M: 1.6 Million Pathology Image-text Pairs Generation through Multi-agent Collaboration · ICLR 2025
Medical and health informatics › computational pathology › histopathology image analysis
whole slide image analysis
0.912025
CPathAgent: An Agent-based Foundation Model for Interpretable High-Resolution Pathology Image Analysis Mimicking Pathologists' Diagnostic Logic · NeurIPS 2025
Computer vision › 3D vision
3d human pose estimation
0.812024
3D Human Pose Estimation from Multiple Dynamic Views via Single-view Pretraining with Procrustes Alignment · ACM Multimedia 2024
Computer vision › 3D vision › 3d human pose estimation
multi-view 3d human pose estimation
0.812024
3D Human Pose Estimation from Multiple Dynamic Views via Single-view Pretraining with Procrustes Alignment · ACM Multimedia 2024
Knowledge, reasoning and agents › Knowledge representation and reasoning › diagnosis
diagnostic reasoning
0.312025
CPathAgent: An Agent-based Foundation Model for Interpretable High-Resolution Pathology Image Analysis Mimicking Pathologists' Diagnostic Logic · NeurIPS 2025
Natural language and speech › Language models and text generation
instruction tuning
0.312025
PathGen-1.6M: 1.6 Million Pathology Image-text Pairs Generation through Multi-agent Collaboration · ICLR 2025
Machine learning › Trustworthy machine learning
interpretability
0.312025
CPathAgent: An Agent-based Foundation Model for Interpretable High-Resolution Pathology Image Analysis Mimicking Pathologists' Diagnostic Logic · NeurIPS 2025
Computer vision › Face, body and person analysis
human pose estimation
0.212024
3D Human Pose Estimation from Multiple Dynamic Views via Single-view Pretraining with Procrustes Alignment · ACM Multimedia 2024

Methods — techniques the papers use, named apart from their topics

CLIP · 3.5visual instruction tuning · 1.7multi-stage training · 1.7multi-agent collaboration · 1.7large multimodal model · 1.7agent-based navigation · 1.7zero-shot evaluation · 1.0fine-tuning · 1.0single-view pretraining · 0.8procrustes alignment · 0.8multi-view consistency · 0.8motion encoder · 0.8
YearPublicationVenuePosition
2026 MIRA: Evaluating Multimodal AI on Complex Clinical Reasoning in Interventional Radiology
abstract
We present MIRA (Multimodal Interventional RAdiology evaluation), a comprehensive benchmark for evaluating large multimodal models in expert-level interventional radiology tasks requiring specialized domain knowledge and advanced visual reasoning capabilities. Unlike existing medical benchmarks that primarily provide binary labels without contextual depth, MIRA offers diverse question formats, including open-ended, closed-ended, single-choice, and multiple-choice categories, each accompanied by detailed expert-validated explanations. The benchmark incorporates approximately 184K high-quality medical images spanning multiple imaging modalities with 1.2M meticulously generated question-answer pairs across various anatomical regions. These pairs were created through a sophisticated cascade methodology involving expert interventional radiologists at both the data collection and validation stages. Our comprehensive evaluation, encompassing zero-shot testing and fine-tuning experiments of large multimodal models, revealing significant performance gaps between AI systems and human specialists. Fine-tuning experiments demonstrate substantial improvements, with models achieving up to 0.80 accuracy on single-choice questions. MIRA establishes a challenging benchmark that suggests promising directions for developing specialized clinical AI systems for interventional radiology.
Jingxiong Li, Chenglu Zhu, Sunyi Zheng, Yuxuan Sun 0002, Yixuan Si, Lin Yang 0002, Liang Xiao 0001
AAAI8
2025 CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology
abstract
The emergence of large multimodal models (LMMs) has brought significant advancements to pathology. Previous research has primarily focused on separately training patch-level and whole-slide image (WSI)-level models, limiting the integration of learned knowledge across patches and WSIs and resulting in redundant models. In this work, we introduce CPath-Omni, the first 15B parameter LMM that unifies patch and WSI analysis, consolidating a variety of tasks at both levels, including classification, visual question answering, captioning, and visual referring prompting. Extensive experiments demonstrate that CPath-Omni achieves state-of-the-art (SOTA) performance across seven diverse tasks on 39 out of 42 datasets, outperforming or matching task-specific models trained for individual tasks. Additionally, we develop a specialized pathology CLIP-based visual processor for CPath-Omni, CPath-CLIP, which, for the first time, integrates different vision models and incorporates a large language model as a text encoder to build a more powerful CLIP model, which achieves SOTA performance on nine zero-shot and four few-shot datasets. Our findings highlight CPath-Omni’s ability to unify diverse pathology tasks, demonstrating its potential to streamline and advance the field of foundation model in pathology. The code and model are available at CPath-Omni.
Yuxuan Sun 0002, Yixuan Si, Chenglu Zhu, Kai Zhang 0033, Pingyi Chen, Zhongyi Shui, Tao Lin 0004, Lin Yang 0002
CVPR2
2025 PathGen-1.6M: 1.6 Million Pathology Image-text Pairs Generation through Multi-agent Collaboration
abstract
Vision Language Models (VLMs) like CLIP have attracted substantial attention in pathology, serving as backbones for applications such as zero-shot image classification and Whole Slide Image (WSI) analysis. Additionally, they can function as vision encoders when combined with large language models (LLMs) to support broader capabilities. Current efforts to train pathology VLMs rely on pathology image-text pairs from platforms like PubMed, YouTube, and Twitter, which provide limited, unscalable data with generally suboptimal image quality. In this work, we leverage large-scale WSI datasets like TCGA to extract numerous high-quality image patches. We then train a large multimodal model (LMM) to generate captions for extracted images, creating PathGen-1.6M, a dataset containing 1.6 million high-quality image-caption pairs. Our approach involves multiple agent models collaborating to extract representative WSI patches, generating and refining captions to obtain high-quality image-text pairs. Extensive experiments show that integrating these generated pairs with existing datasets to train a pathology-specific CLIP model, PathGen-CLIP, significantly enhances its ability to analyze pathological images, with substantial improvements across nine pathology-related zero-shot image classification tasks and three whole-slide image tasks. Furthermore, we construct 200K instruction-tuning data based on PathGen-1.6M and integrate PathGen-CLIP with the Vicuna LLM to create more powerful multimodal models through instruction tuning. Overall, we provide a scalable pathway for high-quality data generation in pathology, paving the way for next-generation general pathology models. Our dataset, code, and model are open-access at https://github.com/PathFoundation/PathGen-1.6M.
Yuxuan Sun 0002, Yixuan Si, Chenglu Zhu, Kai Zhang 0033, Zhongyi Shui, Jingxiong Li, Xinheng Lyu, Tao Lin 0004, Lin Yang 0002
ICLR3
2025 CPathAgent: An Agent-based Foundation Model for Interpretable High-Resolution Pathology Image Analysis Mimicking Pathologists' Diagnostic Logic
abstract
Recent advances in computational pathology have led to the emergence of numerous foundation models. These models typically rely on general-purpose encoders with multi-instance learning for whole slide image (WSI) classification or apply multimodal approaches to generate reports directly from images. However, these models cannot emulate the diagnostic approach of pathologists, who systematically examine slides at low magnification to obtain an overview before progressively zooming in on suspicious regions to formulate comprehensive diagnoses. Instead, existing models directly output final diagnoses without revealing the underlying reasoning process. To address this gap, we introduce CPathAgent, an innovative agent-based approach that mimics pathologists' diagnostic workflow by autonomously navigating across WSI through zoom-in/out and move operations based on observed visual features, thereby generating substantially more transparent and interpretable diagnostic summaries. To achieve this, we develop a multi-stage training strategy that unifies patch-level, region-level, and WSI-level capabilities within a single model, which is essential for replicating how pathologists understand and reason across diverse image scales. Additionally, we construct PathMMU-HR², the first expert-validated benchmark for large region analysis. This represents a critical intermediate scale between patches and whole slides, reflecting a key clinical reality where pathologists typically examine several key large regions rather than entire slides at once. Extensive experiments demonstrate that CPathAgent consistently outperforms existing approaches across benchmarks at three different image scales, validating the effectiveness of our agent-based diagnostic approach and highlighting a promising direction for computational pathology.
Yuxuan Sun 0002, Yixuan Si, Chenglu Zhu, Kai Zhang 0033, Zhongyi Shui, Tao Lin 0004, Lin Yang 0002
NeurIPS2
2025 PathBench: Advancing the Benchmark of Large Multimodal Models for Pathology Image Understanding at Patch and Whole Slide Level
abstract
Rapid advancements in large multimodal models (LMMs) have significantly enhanced their applications in pathology, particularly in image classification, pathology image description, and whole slide image (WSI) classification. In pathology, WSIs represent gigapixel-scale images composed of thousands of image patches. Therefore, both patch-level and WSI-level evaluations are essential and inherently interconnected for assessing LMM capabilities. In this work, we propose PathBench, which comprises three subsets at both patch and WSI levels, to refine and enhance the validation of LMMs. At the patch-level, evaluations using existing multi-choice Q&A datasets reveal that some LMMs can predict answers without genuine image analysis. To address this, we introduce PatchVQA, a large-scale visual question answering (VQA) dataset containing 5,382 images and 6,335 multiple-choice questions designed with distractor options to prevent shortcut learning. These new questions are rigorously validated by professional pathologists to ensure reliable model assessments. At the WSI-level, current efforts primarily focus on image classification tasks and lack diverse validation datasets for multimodal models. To address this, we generate a detailed WSI report dataset through an innovative approach that integrates detailed patch descriptions generated by foundational models into comprehensive WSI reports. These are then combined with physician-written reports corresponding to TCGA WSIs, resulting in WSICap, a detailed report dataset containing 7,000 samples. Based on WSICap, we further develop a WSI-level VQA dataset, WSIVQA, to serve as a validation set for WSI LMMs. Using these PathBench subsets, we conduct extensive experiments to benchmark the performance of state-of-the-art LMMs at both the patch and WSI levels. The proposed dataset is available at https://github.com/superjamessyx/PathBench.
Yuxuan Sun 0002, Hao Wu 0072, Chenglu Zhu, Yixuan Si, Qizi Chen, Kai Zhang 0033, Jingxiong Li, Jiatong Cai, Lin Sun 0006, Tao Lin 0004, Lin Yang 0002
IEEE Trans. Medical Imaging4
2024 3D Human Pose Estimation from Multiple Dynamic Views via Single-view Pretraining with Procrustes Alignment
abstract
3D Human pose estimation from multiple cameras with unknown calibration has received less attention than it should. The few existing data-driven solutions do not fully exploit 3D training data that are available on the market, and typically train from scratch for every novel multi-view scene, which impedes both accuracy and efficiency. We show how to exploit 3D training data to the fullest and associate multiple dynamic views efficiently to achieve high precision on novel scenes using a simple yet effective framework, dubbed Multiple Dynamic View Pose estimation (MDVPose). MDVPose utilizes novel scenarios data to finetune a single-view pretrained motion encoder in multi-view setting, aligns arbitrary number of views in a unified coordinate via Procruste alignment, and imposes multi-view consistency. The proposed method achieves 22.1 mm P-MPJPE or 34.2 mm MPJPE on the challenging in-the-wild Ski-Pose PTZ dataset, which outperforms the state-of-the-art method by 24.8% P-MPJPE (-7.3 mm) and 19.0% MPJPE (-8.0 mm). It also outperforms the state-of-the-art methods by a large margin (-18.2mm P-MPJPE and -28.3mm MPJPE) on the EgoBody dataset. In addition, MDVPose achieves robust performance on the Human3.6M datasets featuring multiple static cameras. Code is available at https://github.com/iGame-Lab/MDVPose.
Renshu Gu, Yixuan Si, Fei Gao 0006, Jiamin Xu, Gang Xu 0001
ACM Multimedia3