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Michal Kmicikiewicz

dblp:386/3743 · DBLP profile ↗
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2ranked-venue papers
1as first author
2since 2021 · last 2025
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 2 · 1 first-author · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
1 paper
Generative modeling · 25% Probabilistic and Bayesian machine learning · 25% Efficient and distributed learning · 25%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 6 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Efficient and distributed learning
active learning
0.912025
ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025
Machine learning › Generative modeling
generative model
0.912025
ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025
Machine learning › Probabilistic and Bayesian machine learning › monte carlo methods
sequential monte carlo
0.912025
ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025
Machine learning › Optimization for machine learning › model-based optimization › bayesian optimization
surrogate model
0.912025
ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025
Bioinformatics and computational biology
protein design
0.912025
ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025
Bioinformatics and computational biology › protein design
protein sequence design
0.912025
ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025

Methods — techniques the papers use, named apart from their topics

sequential monte carlo · 1.7pre-trained generative model · 1.7active learning · 1.7
YearPublicationVenuePosition
2025 ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods
abstract
Designing protein sequences of both high fitness and novelty is a challenging task in data-efficient protein engineering. Exploration beyond wild-type neighborhoods often leads to biologically implausible sequences or relies on surrogate models that lose fidelity in novel regions. Here, we propose ProSpero, an active learning framework in which a frozen pre-trained generative model is guided by a surrogate updated from oracle feedback. By integrating fitness-relevant residue selection with biologically-constrained Sequential Monte Carlo sampling, our approach enables exploration beyond wild-type neighborhoods while preserving biological plausibility. We show that our framework remains effective even when the surrogate is misspecified. ProSpero consistently outperforms or matches existing methods across diverse protein engineering tasks, retrieving sequences of both high fitness and novelty.
Michal Kmicikiewicz, Vincent Fortuin, Ewa Szczurek
NeurIPS1
2024 Target-Aware Drug Activity Model: A Deep Learning Approach to Virtual HTS
Szymon Czaplak, Tomasz Fraczek, Fabrizio Ambrogi, Michal Kmicikiewicz, Jörg Wichard, Anna Karawajczyk
ICANN (10)4