Demo Data from EDBT 2026 / reviewers in the wild / expert
Michal Kmicikiewicz
dblp:386/3743
· DBLP profile ↗
2ranked-venue papers
1as first author
2since 2021 · last 2025
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Artificial intelligence and machine learning · 2 · 1 first-author · 2 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Artificial intelligence
1 paper |
Generative modeling · 25% Probabilistic and Bayesian machine learning · 25% Efficient and distributed learning · 25% | |
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 6 heaviest of 6, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Machine learning › Efficient and distributed learning
active learning |
0.9 | 1 | 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025 |
Machine learning › Generative modeling
generative model |
0.9 | 1 | 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025 |
Machine learning › Probabilistic and Bayesian machine learning › monte carlo methods
sequential monte carlo |
0.9 | 1 | 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025 |
Machine learning › Optimization for machine learning › model-based optimization › bayesian optimization
surrogate model |
0.9 | 1 | 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025 |
Bioinformatics and computational biology
protein design |
0.9 | 1 | 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025 |
Bioinformatics and computational biology › protein design
protein sequence design |
0.9 | 1 | 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type Neighborhoods · NeurIPS 2025 |
Methods — techniques the papers use, named apart from their topics
sequential monte carlo · 1.7pre-trained generative model · 1.7active learning · 1.7
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | ProSpero: Active Learning for Robust Protein Design Beyond Wild-Type NeighborhoodsabstractDesigning protein sequences of both high fitness and novelty is a challenging task in data-efficient protein engineering. Exploration beyond wild-type neighborhoods often leads to biologically implausible sequences or relies on surrogate models that lose fidelity in novel regions. Here, we propose ProSpero, an active learning framework in which a frozen pre-trained generative model is guided by a surrogate updated from oracle feedback. By integrating fitness-relevant residue selection with biologically-constrained Sequential Monte Carlo sampling, our approach enables exploration beyond wild-type neighborhoods while preserving biological plausibility. We show that our framework remains effective even when the surrogate is misspecified.
ProSpero consistently outperforms or matches existing methods across diverse protein engineering tasks, retrieving sequences of both high fitness and novelty. Michal Kmicikiewicz, Vincent Fortuin, Ewa Szczurek |
NeurIPS | 1 |
| 2024 | Target-Aware Drug Activity Model: A Deep Learning Approach to Virtual HTS
Szymon Czaplak, Tomasz Fraczek, Fabrizio Ambrogi, Michal Kmicikiewicz, Jörg Wichard, Anna Karawajczyk |
ICANN (10) | 4 |