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Kristian Che St. Gabriel

dblp:39/11002 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2012
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
comparative genomics		 0.112012
Roundup 2.0: enabling comparative genomics for over 1800 genomes · Bioinform. 2012
Bioinformatics and computational biology
phylogenetics		 0.112012
Roundup 2.0: enabling comparative genomics for over 1800 genomes · Bioinform. 2012
Bioinformatics and computational biology › phylogenetics
phylogenetic profiling		 0.112012
Roundup 2.0: enabling comparative genomics for over 1800 genomes · Bioinform. 2012
Bioinformatics and computational biology › genomics › genomic data management
genome database		 0.012012
Roundup 2.0: enabling comparative genomics for over 1800 genomes · Bioinform. 2012

Methods — techniques the papers use, named apart from their topics

reciprocal smallest distance algorithm · 0.1
YearPublicationVenuePosition
2012 Roundup 2.0: enabling comparative genomics for over 1800 genomes
abstract
UNLABELLED: Roundup is an online database of gene orthologs for over 1800 genomes, including 226 Eukaryota, 1447 Bacteria, 113 Archaea and 21 Viruses. Orthologs are inferred using the Reciprocal Smallest Distance algorithm. Users may query Roundup for single-linkage clusters of orthologous genes based on any group of genomes. Annotated query results may be viewed in a variety of ways including as clusters of orthologs and as phylogenetic profiles. Genomic results may be downloaded in formats suitable for functional as well as phylogenetic analysis, including the recent OrthoXML standard. In addition, gene IDs can be retrieved using FASTA sequence search. All source code and orthologs are freely available. AVAILABILITY: http://roundup.hms.harvard.edu.
Todd F. DeLuca, Jike Cui, Kristian Che St. Gabriel, Dennis P. Wall
 Bioinform.4