Aris T. Papageorghiou

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42ranked-venue papers
0as first author
23since 2021 · last 2025
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Applied, interdisciplinary, general and emerging computing · 37 · 19 since 2021Graphics, computer vision, multimedia, augmented reality and games · 22 · 13 since 2021Artificial intelligence and machine learning · 3 · 2 since 2021Human-computer interaction and ubiquitous computing · 2 · 2 since 2021Software engineering, systems software and programming languages · 1
YearPublicationVenuePosition
2025 MCAT: Visual Query-Based Localization of Standard Anatomical Clips in Fetal Ultrasound Videos Using Multi-Tier Class-Aware Token Transformer
abstract
Accurate standard plane acquisition in fetal ultrasound (US) videos is crucial for fetal growth assessment, anomaly detection, and adherence to clinical guidelines. However, manually selecting standard frames is time-consuming and prone to intra- and inter-sonographer variability. Existing methods primarily rely on image-based approaches that capture standard frames and then classify the input frames across different anatomies. This ignores the dynamic nature of video acquisition and its interpretation. To address these challenges, we introduce Multi-Tier Class-Aware Token Transformer (MCAT); a visual query-based video clip localization (VQ-VCL) method to assist sonographers by enabling them to capture a quick US sweep. By then providing a visual query of the anatomy they wish to analyze, MCAT returns the video clip containing the standard frames for that anatomy, facilitating thorough screening for potential anomalies. We evaluate MCAT on two ultrasound video datasets and a natural image VQ-VCL dataset based on Ego4D. Our model outperforms state-of-the-art methods by 10% and 13% mtIoU on the ultrasound datasets and by 5.35% mtIoU on the Ego4D dataset, using 96% fewer tokens. MCAT’s efficiency and accuracy have significant potential implications for public health, especially in low- and middle-income countries (LMICs), where it may enhance prenatal care by streamlining standard plane acquisition, simplifying US based screening, diagnosis and allowing sonographers to examine more patients.
Divyanshu Mishra, Pramit Saha, He Zhao 0002, Netzahualcóyotl Hernández, Olga Patey, Aris T. Papageorghiou, J. Alison Noble
AAAI6
2025 Self-supervised Normality Learning and Divergence Vector-Guided Model Merging for Zero-Shot Congenital Heart Disease Detection in Fetal Ultrasound Videos
Pramit Saha, Divyanshu Mishra, Netzahualcóyotl Hernández, Olga Patey, Aris T. Papageorghiou, Yuki Markus Asano, J. Alison Noble
MICCAI (7)5
2025 Latent Motion Profiling for Annotation-Free Cardiac Phase Detection in Adult and Fetal Echocardiography Videos
Yingyu Yang, Qianye Yang, Kangning Cui, Can Peng, Elena D'Alberti, Netzahualcóyotl Hernández, Olga Patey, Aris T. Papageorghiou, J. Alison Noble
MICCAI (14)8
2025 Self-supervised Learning of Echocardiographic Video Representations via Online Cluster Distillation
abstract
Self-supervised learning (SSL) has achieved major advances in natural images and video understanding, but challenges remain in domains like echocardiography (heart ultrasound) due to subtle anatomical structures, complex temporal dynamics, and the current lack of domain-specific pre-trained models. Existing SSL approaches such as contrastive, masked modeling, and clustering-based methods struggle with high intersample similarity, sensitivity to low PSNR inputs common in ultrasound, or aggressive augmentations that distort clinically relevant features. We present DISCOVR (Distilled Image Supervision for Cross Modal Video Representation), a self-supervised dual-branch framework for cardiac ultrasound video representation learning. DISCOVR combines a clustering-based video encoder that models temporal dynamics with an online image encoder that extracts fine-grained spatial semantics. These branches are connected through a semantic cluster distillation loss that transfers anatomical knowledge from the evolving image encoder to the video encoder, enabling temporally coherent representations enriched with fine-grained semantic understanding. Evaluated on six echocardiography datasets spanning fetal, pediatric, and adult populations, DISCOVR outperforms both specialized video anomaly detection methods and state-of-the-art video-SSL baselines in zero-shot and linear probing setups, achieving superior segmentation transfer and strong downstream performance on clinically relevant tasks such as LVEF prediction. **Code available at:** [https://github.com/mdivyanshu97/DISCOVR](https://github.com/mdivyanshu97/DISCOVR)
Divyanshu Mishra, Mohammadreza Salehi, Pramit Saha, Olga Patey, Aris T. Papageorghiou, Yuki Markus Asano, J. Alison Noble
NeurIPS5
2025 ScanAhead: Simplifying standard plane acquisition of fetal head ultrasound
abstract
The fetal standard plane acquisition task aims to detect an Ultrasound (US) image characterized by specified anatomical landmarks and appearance for assessing fetal growth. However, in practice, due to variability in human operator skill and possible fetal motion, it can be challenging for a human operator to acquire a satisfactory standard plane. To support a human operator with this task, this paper first describes an approach to automatically predict the fetal head standard plane from a video segment approaching the standard plane. A transformer-based image predictor is proposed to produce a high-quality standard plane by understanding diverse scales of head anatomy within the US video frame. Because of the visual gap between the video frames and standard plane image, the predictor is equipped with an offset adaptor that performs domain adaption to translate the off-plane structures to the anatomies that would usually appear in a standard plane view. To enhance the anatomical details of the predicted US image, the approach is extended by utilizing a second modality, US probe movement, that provides 3D location information. Quantitative and qualitative studies conducted on two different head biometry planes demonstrate that the proposed US image predictor produces clinically plausible standard planes with superior performance to comparative published methods. The results of dual-modality solution show an improved visualization with enhanced anatomical details of the predicted US image. Clinical evaluations are also conducted to demonstrate the consistency between the predicted echo textures and the expected echo patterns seen in a typical real standard plane, which indicates its clinical feasibility for improving the standard plane acquisition process.
Qianhui Men, He Zhao 0002, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.4
2025 TIER-LOC: Visual Query-based Video Clip Localization in fetal ultrasound videos with a multi-tier transformer
Divyanshu Mishra, Pramit Saha, He Zhao 0002, Netzahualcóyotl Hernández, Olga Patey, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.6
2025 HarmonicEchoNet: Leveraging harmonic convolutions for automated standard plane detection in fetal heart ultrasound videos
abstract
Fetal echocardiography offers non-invasive and real-time imaging acquisition of fetal heart images to identify congenital heart conditions. Manual acquisition of standard heart views is time-consuming, whereas automated detection remains challenging due to high spatial similarity across anatomical views with subtle local image appearance variations. To address these challenges, we introduce a very lightweight frequency-guided deep learning-based model named HarmonicEchoNet that can automatically detect heart standard views in a transverse sweep or freehand ultrasound scan of the fetal heart. HarmonicEchoNet uses harmonic convolution blocks (HCBs) and a harmonic spatial and channel squeeze-and-excitation (hscSE) module. The HCBs apply a Discrete Cosine Transform (DCT)-based harmonic decomposition to input features, which are then combined using learned weights. The hscSE module identifies significant regions in the spatial domain to improve feature extraction of the fetal heart anatomical structures, capturing both spatial and channel-wise dependencies in an ultrasound image. The combination of these modules improves model performance relative to recent CNN-based, transformer-based, and CNN+transformer-based image classification models. We use four datasets from two private studies, PULSE (Perception Ultrasound by Learning Sonographic Experience) and CAIFE (Clinical Artificial Intelligence in Fetal Echocardiography), to develop and evaluate HarmonicEchoNet models. Experimental results show that HarmonicEchoNet is 10-15 times faster than ConvNeXt, DeiT, and VOLO, with an inference time of just 3.9 ms. It also achieves 2%-7% accuracy improvement in classifying fetal heart standard planes compared to these baselines. Furthermore, with just 19.9 million parameters compared to ConvNeXt's 196.24 million, HarmonicEchoNet is nearly ten times more parameter-efficient.
Md. Mostafa Kamal Sarker, Divyanshu Mishra, Mohammad Alsharid, Netzahualcóyotl Hernández, Rahul Ahuja, Olga Patey, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.7
2024 Zoom Pattern Signatures for Fetal Ultrasound Structures
Mohammad Alsharid, Robail Yasrab, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (4)4
2024 Pose-GuideNet: Automatic Scanning Guidance for Fetal Head Ultrasound from Pose Estimation
Qianhui Men, Xiaoqing Guo, Aris T. Papageorghiou, J. Alison Noble
MICCAI (4)3
2024 STAN-LOC: Visual Query-Based Video Clip Localization for Fetal Ultrasound Sweep Videos
Divyanshu Mishra, Pramit Saha, He Zhao 0002, Olga Patey, Aris T. Papageorghiou, J. Alison Noble
MICCAI (4)5
2023 Dual Conditioned Diffusion Models for Out-of-Distribution Detection: Application to Fetal Ultrasound Videos
Divyanshu Mishra, He Zhao 0002, Pramit Saha, Aris T. Papageorghiou, J. Alison Noble
MICCAI (1)4
2023 Gaze-probe joint guidance with multi-task learning in obstetric ultrasound scanning
abstract
In this work, we exploit multi-task learning to jointly predict the two decision-making processes of gaze movement and probe manipulation that an experienced sonographer would perform in routine obstetric scanning. A multimodal guidance framework, Multimodal-GuideNet, is proposed to detect the causal relationship between a real-world ultrasound video signal, synchronized gaze, and probe motion. The association between the multi-modality inputs is learned and shared through a modality-aware spatial graph that leverages useful cross-modal dependencies. By estimating the probability distribution of probe and gaze movements in real scans, the predicted guidance signals also allow inter- and intra-sonographer variations and avoid a fixed scanning path. We validate the new multi-modality approach on three types of obstetric scanning examinations, and the result consistently outperforms single-task learning under various guidance policies. To simulate sonographer's attention on multi-structure images, we also explore multi-step estimation in gaze guidance, and its visual results show that the prediction allows multiple gaze centers that are substantially aligned with underlying anatomical structures.
Qianhui Men, Clare Teng, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.4
2023 Memory-based unsupervised video clinical quality assessment with multi-modality data in fetal ultrasound
abstract
In obstetric sonography, the quality of acquisition of ultrasound scan video is crucial for accurate (manual or automated) biometric measurement and fetal health assessment. However, the nature of fetal ultrasound involves free-hand probe manipulation and this can make it challenging to capture high-quality videos for fetal biometry, especially for the less-experienced sonographer. Manually checking the quality of acquired videos would be time-consuming, subjective and requires a comprehensive understanding of fetal anatomy. Thus, it would be advantageous to develop an automatic quality assessment method to support video standardization and improve diagnostic accuracy of video-based analysis. In this paper, we propose a general and purely data-driven video-based quality assessment framework which directly learns a distinguishable feature representation from high-quality ultrasound videos alone, without anatomical annotations. Our solution effectively utilizes both spatial and temporal information of ultrasound videos. The spatio-temporal representation is learned by a bi-directional reconstruction between the video space and the feature space, enhanced by a key-query memory module proposed in the feature space. To further improve performance, two additional modalities are introduced in training which are the sonographer gaze and optical flow derived from the video. Two different clinical quality assessment tasks in fetal ultrasound are considered in our experiments, i.e., measurement of the fetal head circumference and cerebellar diameter; in both of these, low-quality videos are detected by the large reconstruction error in the feature space. Extensive experimental evaluation demonstrates the merits of our approach.
He Zhao 0002, Qingqing Zheng, Clare Teng, Robail Yasrab, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.6
2023 A Machine Learning Method for Automated Description and Workflow Analysis of First Trimester Ultrasound Scans
abstract
Obstetric ultrasound assessment of fetal anatomy in the first trimester of pregnancy is one of the less explored fields in obstetric sonography because of the paucity of guidelines on anatomical screening and availability of data. This paper, for the first time, examines imaging proficiency and practices of first trimester ultrasound scanning through analysis of full-length ultrasound video scans. Findings from this study provide insights to inform the development of more effective user-machine interfaces, of targeted assistive technologies, as well as improvements in workflow protocols for first trimester scanning. Specifically, this paper presents an automated framework to model operator clinical workflow from full-length routine first-trimester fetal ultrasound scan videos. The 2D+t convolutional neural network-based architecture proposed for video annotation incorporates transfer learning and spatio-temporal (2D+t) modelling to automatically partition an ultrasound video into semantically meaningful temporal segments based on the fetal anatomy detected in the video. The model results in a cross-validation A1 accuracy of 96.10% , F1=0.95 , precision =0.94 and recall =0.95 . Automated semantic partitioning of unlabelled video scans (n=250) achieves a high correlation with expert annotations ( ρ = 0.95, p=0.06 ). Clinical workflow patterns, operator skill and its variability can be derived from the resulting representation using the detected anatomy labels, order, and distribution. It is shown that nuchal translucency (NT) is the toughest standard plane to acquire and most operators struggle to localize high-quality frames. Furthermore, it is found that newly qualified operators spend 25.56% more time on key biometry tasks than experienced operators.
Robail Yasrab, Zeyu Fu, He Zhao 0002, Lok Hin Lee, Harshita Sharma, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
IEEE Trans. Medical Imaging7
2022 Skill Characterisation of Sonographer Gaze Patterns during Second Trimester Clinical Fetal Ultrasounds using Time Curves
abstract
We present a method for skill characterisation of sonographer gaze patterns while performing routine second trimester fetal anatomy ultrasound scans. The position and scale of fetal anatomical planes during each scan differ because of fetal position, movements and sonographer skill. A standardised reference is required to compare recorded eye-tracking data for skill characterisation. We propose using an affine transformer network to localise the anatomy circumference in video frames, for normalisation of eye-tracking data. We use an event-based data visualisation, time curves, to characterise sonographer scanning patterns. We chose brain and heart anatomical planes because they vary in levels of gaze complexity. Our results show that when sonographers search for the same anatomical plane, even though the landmarks visited are similar, their time curves display different visual patterns. Brain planes also, on average, have more events or landmarks occurring than the heart, which highlights anatomy-specific differences in searching approaches.
Clare Teng, Lok Hin Lee, Jayne Lander, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
ETRA5
2022 Visualising Spatio-Temporal Gaze Characteristics for Exploratory Data Analysis in Clinical Fetal Ultrasound Scans
abstract
Visualising patterns in clinicians' eye movements while interpreting fetal ultrasound imaging videos is challenging. Across and within videos, there are differences in size an d position of Areas-of-Interest (AOIs) due to fetal position, movement and sonographer skill. Currently, AOIs are manually labelled or identified using eye-tracker manufacturer specifications which are not study specific. We propose using unsupervised clustering to identify meaningful AOIs and bi-contour plots to visualise spatio-temporal gaze characteristics. We use Hierarchical Density-Based Spatial Clustering of Applications with Noise (HDBSCAN) to identify the AOIs, and use their corresponding images to capture granular changes within each AOI. Then we visualise transitions within and between AOIs as read by the sonographer. We compare our method to a standardised eye-tracking manufacturer algorithm. Our method captures granular changes in gaze characteristics which are otherwise not shown. Our method is suitable for exploratory data analysis of eye-tracking data involving multiple participants and AOIs.
Clare Teng, Harshita Sharma, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
ETRA4
2022 Multimodal-GuideNet: Gaze-Probe Bidirectional Guidance in Obstetric Ultrasound Scanning
Qianhui Men, Clare Teng, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (8)4
2022 USPoint: Self-Supervised Interest Point Detection and Description for Ultrasound-Probe Motion Estimation During Fine-Adjustment Standard Fetal Plane Finding
Cheng Zhao 0002, Richard Droste, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (8)4
2022 Towards Unsupervised Ultrasound Video Clinical Quality Assessment with Multi-modality Data
He Zhao 0002, Qingqing Zheng, Clare Teng, Robail Yasrab, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (4)6
2022 Gaze-assisted automatic captioning of fetal ultrasound videos using three-way multi-modal deep neural networks
abstract
In this work, we present a novel gaze-assisted natural language processing (NLP)-based video captioning model to describe routine second-trimester fetal ultrasound scan videos in a vocabulary of spoken sonography. The primary novelty of our multi-modal approach is that the learned video captioning model is built using a combination of ultrasound video, tracked gaze and textual transcriptions from speech recordings. The textual captions that describe the spatio-temporal scan video content are learnt from sonographer speech recordings. The generation of captions is assisted by sonographer gaze-tracking information reflecting their visual attention while performing live-imaging and interpreting a frozen image. To evaluate the effect of adding, or withholding, different forms of gaze on the video model, we compare spatio-temporal deep networks trained using three multi-modal configurations, namely: (1) a gaze-less neural network with only text and video as input, (2) a neural network additionally using real sonographer gaze in the form of attention maps, and (3) a neural network using automatically-predicted gaze in the form of saliency maps instead. We assess algorithm performance through established general text-based metrics (BLEU, ROUGE-L, F1 score), a domain-specific metric (ARS), and metrics that consider the richness and efficiency of the generated captions with respect to the scan video. Results show that the proposed gaze-assisted models can generate richer and more diverse captions for clinical fetal ultrasound scan videos than those without gaze at the expense of the perceived sentence structure. The results also show that the generated captions are similar to sonographer speech in terms of discussing the visual content and the scanning actions performed.
Mohammad Alsharid, Harshita Sharma, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.5
2021 Visual-Assisted Probe Movement Guidance for Obstetric Ultrasound Scanning Using Landmark Retrieval
Cheng Zhao 0002, Richard Droste, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (8)4
2021 Knowledge representation and learning of operator clinical workflow from full-length routine fetal ultrasound scan videos
abstract
Ultrasound is a widely used imaging modality, yet it is well-known that scanning can be highly operator-dependent and difficult to perform, which limits its wider use in clinical practice. The literature on understanding what makes clinical sonography hard to learn and how sonography varies in the field is sparse, restricted to small-scale studies on the effectiveness of ultrasound training schemes, the role of ultrasound simulation in training, and the effect of introducing scanning guidelines and standards on diagnostic image quality. The Big Data era, and the recent and rapid emergence of machine learning as a more mainstream large-scale data analysis technique, presents a fresh opportunity to study sonography in the field at scale for the first time. Large-scale analysis of video recordings of full-length routine fetal ultrasound scans offers the potential to characterise differences between the scanning proficiency of experts and trainees that would be tedious and time-consuming to do manually due to the vast amounts of data. Such research would be informative to better understand operator clinical workflow when conducting ultrasound scans to support skills training, optimise scan times, and inform building better user-machine interfaces. This paper is to our knowledge the first to address sonography data science, which we consider in the context of second-trimester fetal sonography screening. Specifically, we present a fully-automatic framework to analyse operator clinical workflow solely from full-length routine second-trimester fetal ultrasound scan videos. An ultrasound video dataset containing more than 200 hours of scan recordings was generated for this study. We developed an original deep learning method to temporally segment the ultrasound video into semantically meaningful segments (the video description). The resulting semantic annotation was then used to depict operator clinical workflow (the knowledge representation). Machine learning was applied to the knowledge representation to characterise operator skills and assess operator variability. For video description, our best-performing deep spatio-temporal network shows favourable results in cross-validation (accuracy: 91.7%), statistical analysis (correlation: 0.98, p < 0.05) and retrospective manual validation (accuracy: 76.4%). For knowledge representation of operator clinical workflow, a three-level abstraction scheme consisting of a Subject-specific Timeline Model (STM), Summary of Timeline Features (STF), and an Operator Graph Model (OGM), was introduced that led to a significant decrease in dimensionality and computational complexity compared to raw video data. The workflow representations were learnt to discriminate between operator skills, where a proposed convolutional neural network-based model showed most promising performance (cross-validation accuracy: 98.5%, accuracy on unseen operators: 76.9%). These were further used to derive operator-specific scanning signatures and operator variability in terms of type, order and time distribution of constituent tasks.
Harshita Sharma, Lior Drukker, Pierre Chatelain, Richard Droste, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.5
2021 Learning to map 2D ultrasound images into 3D space with minimal human annotation
Pak-Hei Yeung, Moska Aliasi, Aris T. Papageorghiou, Monique C. Haak, Weidi Xie, Ana I. L. Namburete
Medical Image Anal.3
2020 Automatic Probe Movement Guidance for Freehand Obstetric Ultrasound
Richard Droste, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (3)3
2020 Self-Supervised Contrastive Video-Speech Representation Learning for Ultrasound
Jianbo Jiao, Mohammad Alsharid, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (3)5
2020 Uncertainty Estimates as Data Selection Criteria to Boost Omni-Supervised Learning
Lorenzo Venturini, Aris T. Papageorghiou, J. Alison Noble, Ana I. L. Namburete
MICCAI (1)2
2020 Spatio-temporal visual attention modelling of standard biometry plane-finding navigation
abstract
We present a novel multi-task neural network called Temporal SonoEyeNet (TSEN) with a primary task to describe the visual navigation process of sonographers by learning to generate visual attention maps of ultrasound images around standard biometry planes of the fetal abdomen, head (trans-ventricular plane) and femur. TSEN has three components: a feature extractor, a temporal attention module (TAM), and an auxiliary video classification module (VCM). A soft dynamic time warping (sDTW) loss function is used to improve visual attention modelling. Variants of the model are trained on a dataset of 280 video clips, each containing one of the three biometry planes and lasting 3-7 seconds, with corresponding real-time recorded gaze tracking data of an experienced sonographer. We report the performances of the different variants of TSEN for visual attention prediction at standard biometry plane detection. The best model performance is achieved using bi-directional convolutional long-short term memory (biCLSTM) in both TAM and VCM, and it outperforms a previous spatial model on all static and dynamic saliency metrics. As an auxiliary task to validate the clinical relevance of the visual attention modelling, the predicted visual attention maps were used to guide standard biometry plane detection in consecutive US video frames. All spatio-temporal TSEN models achieve higher scores compared to a spatial-only baseline; the best performing TSEN model achieves F1 scores on these standard biometry planes of 83.7%, 89.9% and 81.1%, respectively.
Richard Droste, Harshita Sharma, Pierre Chatelain, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.6
2020 Evaluation of Gaze Tracking Calibration for Longitudinal Biomedical Imaging Studies
abstract
Gaze tracking is a promising technology for studying the visual perception of clinicians during image-based medical exams. It could be used in longitudinal studies to analyze their perceptive process, explore human-machine interactions, and develop innovative computer-aided imaging systems. However, using a remote eye tracker in an unconstrained environment and over time periods of weeks requires a certain guarantee of performance to ensure that collected gaze data are fit for purpose. We report the results of evaluating eye tracking calibration for longitudinal studies. First, we tested the performance of an eye tracker on a cohort of 13 users over a period of one month. For each participant, the eye tracker was calibrated during the first session. The participants were asked to sit in front of a monitor equipped with the eye tracker, but their position was not constrained. Second, we tested the performance of the eye tracker on sonographers positioned in front of a cart-based ultrasound scanner. Experimental results show a decrease of accuracy between calibration and later testing of 0.30° and a further degradation over time at a rate of 0.13°. month-1. The overall median accuracy was 1.00° (50.9 pixels) and the overall median precision was 0.16° (8.3 pixels). The results from the ultrasonography setting show a decrease of accuracy of 0.16° between calibration and later testing. This slow degradation of gaze tracking accuracy could impact the data quality in long-term studies. Therefore, the results we present here can help in planning such long-term gaze tracking studies.
Pierre Chatelain, Harshita Sharma, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
IEEE Trans. Cybern.4
2020 Self-Supervised Ultrasound to MRI Fetal Brain Image Synthesis
abstract
Fetal brain magnetic resonance imaging (MRI) offers exquisite images of the developing brain but is not suitable for second-trimester anomaly screening, for which ultrasound (US) is employed. Although expert sonographers are adept at reading US images, MR images which closely resemble anatomical images are much easier for non-experts to interpret. Thus in this article we propose to generate MR-like images directly from clinical US images. In medical image analysis such a capability is potentially useful as well, for instance for automatic US-MRI registration and fusion. The proposed model is end-to-end trainable and self-supervised without any external annotations. Specifically, based on an assumption that the US and MRI data share a similar anatomical latent space, we first utilise a network to extract the shared latent features, which are then used for MRI synthesis. Since paired data is unavailable for our study (and rare in practice), pixel-level constraints are infeasible to apply. We instead propose to enforce the distributions to be statistically indistinguishable, by adversarial learning in both the image domain and feature space. To regularise the anatomical structures between US and MRI during synthesis, we further propose an adversarial structural constraint. A new cross-modal attention technique is proposed to utilise non-local spatial information, by encouraging multi-modal knowledge fusion and propagation. We extend the approach to consider the case where 3D auxiliary information (e.g., 3D neighbours and a 3D location index) from volumetric data is also available, and show that this improves image synthesis. The proposed approach is evaluated quantitatively and qualitatively with comparison to real fetal MR images and other approaches to synthesis, demonstrating its feasibility of synthesising realistic MR images.
Jianbo Jiao, Ana I. L. Namburete, Aris T. Papageorghiou, J. Alison Noble
IEEE Trans. Medical Imaging3
2019 Captioning Ultrasound Images Automatically
Mohammad Alsharid, Harshita Sharma, Lior Drukker, Pierre Chatelain, Aris T. Papageorghiou, J. Alison Noble
MICCAI (4)5
2019 Efficient Ultrasound Image Analysis Models with Sonographer Gaze Assisted Distillation
Arijit Patra, Pierre Chatelain, Harshita Sharma, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble
MICCAI (4)6
2017 A framework for analysis of linear ultrasound videos to detect fetal presentation and heartbeat
abstract
Confirmation of pregnancy viability (presence of fetal cardiac activity) and diagnosis of fetal presentation (head or buttock in the maternal pelvis) are the first essential components of ultrasound assessment in obstetrics. The former is useful in assessing the presence of an on-going pregnancy and the latter is essential for labour management. We propose an automated framework for detection of fetal presentation and heartbeat from a predefined free-hand ultrasound sweep of the maternal abdomen. Our method exploits the presence of key anatomical sonographic image patterns in carefully designed scanning protocols to develop, for the first time, an automated framework allowing novice sonographers to detect fetal breech presentation and heartbeat from an ultrasound sweep. The framework consists of a classification regime for a frame by frame categorization of each 2D slice of the video. The classification scores are then regularized through a conditional random field model, taking into account the temporal relationship between the video frames. Subsequently, if consecutive frames of the fetal heart are detected, a kernelized linear dynamical model is used to identify whether a heartbeat can be detected in the sequence. In a dataset of 323 predefined free-hand videos, covering the mother's abdomen in a straight sweep, the fetal skull, abdomen, and heart were detected with a mean classification accuracy of 83.4%. Furthermore, for the detection of the heartbeat an overall classification accuracy of 93.1% was achieved.
Mohammad Ali Maraci, Christopher P. Bridge, Raffaele Napolitano, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.4
2016 Plane Localization in 3-D Fetal Neurosonography for Longitudinal Analysis of the Developing Brain
abstract
The parasagittal (PS) plane is a 2-D diagnostic plane used routinely in cranial ultrasonography of the neonatal brain. This paper develops a novel approach to find the PS plane in a 3-D fetal ultrasound scan to allow image-based biomarkers to be tracked from prebirth through the first weeks of postbirth life. We propose an accurate plane-finding solution based on regression forests (RF). The method initially localizes the fetal brain and its midline automatically. The midline on several axial slices is used to detect the midsagittal plane, which is used as a constraint in the proposed RF framework to detect the PS plane. The proposed learning algorithm guides the RF learning method in a novel way by: 1) using informative voxels and voxel informative strength as a weighting within the training stage objective function, and 2) introducing regularization of the RF by proposing a geometrical feature within the training stage. Results on clinical data indicate that the new automated method is more reproducible than manual plane finding obtained by two clinicians.
Mohammad Yaqub, Sylvia Rueda, Anil Kopuri, Pedro Melo, Aris T. Papageorghiou, Peter B. Sullivan, Kenneth McCormick, J. Alison Noble
IEEE J. Biomed. Health Informatics5
2015 Guided Random Forests for Identification of Key Fetal Anatomy and Image Categorization in Ultrasound Scans
Mohammad Yaqub, Brenda Kelly, Aris T. Papageorghiou, J. Alison Noble
MICCAI (3)3
2015 Learning-based prediction of gestational age from ultrasound images of the fetal brain
abstract
We propose an automated framework for predicting gestational age (GA) and neurodevelopmental maturation of a fetus based on 3D ultrasound (US) brain image appearance. Our method capitalizes on age-related sonographic image patterns in conjunction with clinical measurements to develop, for the first time, a predictive age model which improves on the GA-prediction potential of US images. The framework benefits from a manifold surface representation of the fetal head which delineates the inner skull boundary and serves as a common coordinate system based on cranial position. This allows for fast and efficient sampling of anatomically-corresponding brain regions to achieve like-for-like structural comparison of different developmental stages. We develop bespoke features which capture neurosonographic patterns in 3D images, and using a regression forest classifier, we characterize structural brain development both spatially and temporally to capture the natural variation existing in a healthy population (N=447) over an age range of active brain maturation (18-34weeks). On a routine clinical dataset (N=187) our age prediction results strongly correlate with true GA (r=0.98,accurate within±6.10days), confirming the link between maturational progression and neurosonographic activity observable across gestation. Our model also outperforms current clinical methods by ±4.57 days in the third trimester-a period complicated by biological variations in the fetal population. Through feature selection, the model successfully identified the most age-discriminating anatomies over this age range as being the Sylvian fissure, cingulate, and callosal sulci.
Ana I. L. Namburete, Richard V. Stebbing, Bryn Kemp, Mohammad Yaqub, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.5
2015 Feature-based fuzzy connectedness segmentation of ultrasound images with an object completion step
abstract
Medical ultrasound (US) image segmentation and quantification can be challenging due to signal dropouts, missing boundaries, and presence of speckle, which gives images of similar objects quite different appearance. Typically, purely intensity-based methods do not lead to a good segmentation of the structures of interest. Prior work has shown that local phase and feature asymmetry, derived from the monogenic signal, extract structural information from US images. This paper proposes a new US segmentation approach based on the fuzzy connectedness framework. The approach uses local phase and feature asymmetry to define a novel affinity function, which drives the segmentation algorithm, incorporates a shape-based object completion step, and regularises the result by mean curvature flow. To appreciate the accuracy and robustness of the methodology across clinical data of varying appearance and quality, a novel entropy-based quantitative image quality assessment of the different regions of interest is introduced. The new method is applied to 81 US images of the fetal arm acquired at multiple gestational ages, as a means to define a new automated image-based biomarker of fetal nutrition. Quantitative and qualitative evaluation shows that the segmentation method is comparable to manual delineations and robust across image qualities that are typical of clinical practice.
Sylvia Rueda, Caroline L. Knight, Aris T. Papageorghiou, J. Alison Noble
Medical Image Anal.3
2014 Predicting Fetal Neurodevelopmental Age from Ultrasound Images
Ana I. L. Namburete, Mohammad Yaqub, Bryn Kemp, Aris T. Papageorghiou, J. Alison Noble
MICCAI (2)4
2014 Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge
abstract
This paper presents the evaluation results of the methods submitted to Challenge US: Biometric Measurements from Fetal Ultrasound Images, a segmentation challenge held at the IEEE International Symposium on Biomedical Imaging 2012. The challenge was set to compare and evaluate current fetal ultrasound image segmentation methods. It consisted of automatically segmenting fetal anatomical structures to measure standard obstetric biometric parameters, from 2D fetal ultrasound images taken on fetuses at different gestational ages (21 weeks, 28 weeks, and 33 weeks) and with varying image quality to reflect data encountered in real clinical environments. Four independent sub-challenges were proposed, according to the objects of interest measured in clinical practice: abdomen, head, femur, and whole fetus. Five teams participated in the head sub-challenge and two teams in the femur sub-challenge, including one team who tackled both. Nobody attempted the abdomen and whole fetus sub-challenges. The challenge goals were two-fold and the participants were asked to submit the segmentation results as well as the measurements derived from the segmented objects. Extensive quantitative (region-based, distance-based, and Bland-Altman measurements) and qualitative evaluation was performed to compare the results from a representative selection of current methods submitted to the challenge. Several experts (three for the head sub-challenge and two for the femur sub-challenge), with different degrees of expertise, manually delineated the objects of interest to define the ground truth used within the evaluation framework. For the head sub-challenge, several groups produced results that could be potentially used in clinical settings, with comparable performance to manual delineations. The femur sub-challenge had inferior performance to the head sub-challenge due to the fact that it is a harder segmentation problem and that the techniques presented relied more on the femur's appearance.
Sylvia Rueda, Sana Fathima, Caroline L. Knight, Mohammad Yaqub, Aris T. Papageorghiou, Bahbibi Rahmatullah, Alessandro Foi, Matteo Maggioni, Antonietta Pepe, Jussi Tohka, Richard V. Stebbing, John McManigle, Anca Ciurte, Xavier Bresson, Meritxell Bach Cuadra, Changming Sun, Gennady V. Ponomarev, Mikhail S. Gelfand, Marat D. Kazanov, Ching-Wei Wang, Hsiang-Chou Chen, Chun-Wei Peng, Chu-Mei Hung, J. Alison Noble
IEEE Trans. Medical Imaging5
2013 Registration of 3D fetal neurosonography and MRI
abstract
We propose a method for registration of 3D fetal brain ultrasound with a reconstructed magnetic resonance fetal brain volume. This method, for the first time, allows the alignment of models of the fetal brain built from magnetic resonance images with 3D fetal brain ultrasound, opening possibilities to develop new, prior information based image analysis methods for 3D fetal neurosonography. The reconstructed magnetic resonance volume is first segmented using a probabilistic atlas and a pseudo ultrasound image volume is simulated from the segmentation. This pseudo ultrasound image is then affinely aligned with clinical ultrasound fetal brain volumes using a robust block-matching approach that can deal with intensity artefacts and missing features in the ultrasound images. A qualitative and quantitative evaluation demonstrates good performance of the method for our application, in comparison with other tested approaches. The intensity average of 27 ultrasound images co-aligned with the pseudo ultrasound template shows good correlation with anatomy of the fetal brain as seen in the reconstructed magnetic resonance image.
Maria Deprez, Amalia Cifor, Raffaele Napolitano, Aris T. Papageorghiou, Gerardine Quaghebeur, Mary A. Rutherford, Joseph V. Hajnal, J. Alison Noble, Julia A. Schnabel
Medical Image Anal.4
2012 Image Analysis Using Machine Learning: Anatomical Landmarks Detection in Fetal Ultrasound Images
abstract
Accurate and robust image analysis software is crucial for assessing the quality of ultrasound images of fetal biometry. In this work, we present the result of our automated image analysis method based on a machine learning algorithm in detecting important anatomical landmarks employed in manual scoring of ultrasound images of the fetal abdomen. Experimental results on 2384 images are promising and the clinical validation using 300 images demonstrates a high level agreement between the automated method and experts.
Bahbibi Rahmatullah, Aris T. Papageorghiou, J. Alison Noble
COMPSAC2
2012 Registration of 3D Fetal Brain US and MRI
Maria Deprez, Amalia Cifor, Raffaele Napolitano, Aris T. Papageorghiou, Gerardine Quaghebeur, J. Alison Noble, Julia A. Schnabel
MICCAI (2)4
2012 Integration of Local and Global Features for Anatomical Object Detection in Ultrasound
Bahbibi Rahmatullah, Aris T. Papageorghiou, J. Alison Noble
MICCAI (3)2