Demo Data from EDBT 2026 / reviewers in the wild / expert
Aurélien Jaquier
dblp:390/6072
· DBLP profile ↗
2ranked-venue papers
0as first author
2since 2021 · last 2026
0000-0001-6202-6175ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Artificial intelligence and machine learning · 1 · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 1 heaviest of 1, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
neuroscience |
1.0 | 1 | 2026 | eFEL: electrophysiology feature extraction library · Bioinform. 2026 |
Methods — techniques the papers use, named apart from their topics
parallelization · 1.0caching · 1.0c++ implementation · 1.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | eFEL: electrophysiology feature extraction libraryabstractMOTIVATION: Electrophysiological recordings are essential in experimental and computational neuroscience, providing insights into neuronal excitability and network behaviour. Extracting features such as action potential thresholds, widths, and firing patterns is conceptually straightforward, but in practice it is complicated by heterogeneous datasets and software environments, which hinder reproducibility and interoperability. A standardized, efficient, and portable framework is needed to ensure consistent analysis across platforms and alignment with community data standards. RESULTS: We present the Electrophysiology Feature Extraction Library (eFEL), a cross-platform, open-source library that implements standardized definitions for over 90 electrophysiological features. eFEL combines a high-performance C++ core with a Python interface, supporting customizable feature dependencies, caching, and parallelization. It integrates with community standards such as Neurodata Without Borders and works seamlessly with common electrophysiology formats and simulation environments. Since its initial release in 2015, eFEL has been used in published studies spanning single-cell analysis, model optimization, multimodal fitting, and circuit simulations. eFEL provides a FAIR-compliant, versatile resource for reproducible electrophysiological data analysis. AVAILABILITY AND IMPLEMENTATION: The eFEL library is publicly available at https://github.com/openbraininstitute/eFEL and the associated study data and scripts have been deposited in Zenodo at https://zenodo.org/records/17241835. Darshan Mandge, Anil Tuncel, Aurélien Jaquier, Ilkan Kiliç, Tanguy Damart, Henry Markram, Werner Van Geit, Rajnish Ranjan |
Bioinform. | 3 |
| 2024 | A Multimodal Fitting Approach to Construct Single-Neuron Models With Patch Clamp and High-Density Microelectrode ArraysabstractIn computational neuroscience, multicompartment models are among the most biophysically realistic representations of single neurons. Constructing such models usually involves the use of the patch-clamp technique to record somatic voltage signals under different experimental conditions. The experimental data are then used to fit the many parameters of the model. While patching of the soma is currently the gold-standard approach to build multicompartment models, several studies have also evidenced a richness of dynamics in dendritic and axonal sections. Recording from the soma alone makes it hard to observe and correctly parameterize the activity of nonsomatic compartments. In order to provide a richer set of data as input to multicompartment models, we here investigate the combination of somatic patch-clamp recordings with recordings of high-density microelectrode arrays (HD-MEAs). HD-MEAs enable the observation of extracellular potentials and neural activity of neuronal compartments at subcellular resolution. In this work, we introduce a novel framework to combine patch-clamp and HD-MEA data to construct multicompartment models. We first validate our method on a ground-truth model with known parameters and show that the use of features extracted from extracellular signals, in addition to intracellular ones, yields models enabling better fits than using intracellular features alone. We also demonstrate our procedure using experimental data by constructing cell models from in vitro cell cultures. The proposed multimodal fitting procedure has the potential to augment the modeling efforts of the computational neuroscience community and provide the field with neuronal models that are more realistic and can be better validated. Alessio Paolo Buccino, Tanguy Damart, Julian Bartram, Darshan Mandge, Xiaohan Xue, Mickael Zbili, Tobias Gänswein, Aurélien Jaquier, Vishalini Emmenegger, Henry Markram, Andreas Hierlemann, Werner Van Geit |
Neural Comput. | 8 |