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Alexandre Andre

dblp:405/8013 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2025
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
1 paper
Learning paradigms · 62% Deep learning architectures and training · 38%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Learning paradigms
multi-task learning
0.912025
Neural Encoding and Decoding at Scale · ICML 2025
Bioinformatics and computational biology
neuroscience
0.912025
Neural Encoding and Decoding at Scale · ICML 2025
Machine learning › Deep learning architectures and training › foundation model
brain foundation model
0.312025
Neural Encoding and Decoding at Scale · ICML 2025
Machine learning › Deep learning architectures and training
foundation model
0.312025
Neural Encoding and Decoding at Scale · ICML 2025

Methods — techniques the papers use, named apart from their topics

multimodal pretraining · 1.7multi-task masking · 1.7
YearPublicationVenuePosition
2025 Neural Encoding and Decoding at Scale
abstract
Recent work has demonstrated that large-scale, multi-animal models are powerful tools for characterizing the relationship between neural activity and behavior. Current large-scale approaches, however, focus exclusively on either predicting neural activity from behavior (encoding) or predicting behavior from neural activity (decoding), limiting their ability to capture the bidirectional relationship between neural activity and behavior. To bridge this gap, we introduce a multimodal, multi-task model that enables simultaneous Neural Encoding and Decoding at Scale (NEDS). Central to our approach is a novel multi-task-masking strategy, which alternates between neural, behavioral, within-modality, and cross-modality masking. We pretrain our method on the International Brain Laboratory (IBL) repeated site dataset, which includes recordings from 83 animals performing the visual decision-making task. In comparison to other large-scale modeling approaches, we demonstrate that NEDS achieves state-of-the-art performance for both encoding and decoding when pretrained on multi-animal data and then fine-tuned on new animals. Surprisingly, NEDS’s learned embeddings exhibit emergent properties: even without explicit training, they are highly predictive of the brain regions in each recording. Altogether, our approach is a step towards a foundation model of the brain that enables seamless translation between neural activity and behavior.
Yizi Zhang, Yanchen Wang, Mehdi Azabou, Alexandre Andre, Hanrui Lyu, Eva L. Dyer, Liam Paninski, Cole L. Hurwitz
ICML4