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Bokeum Cho

dblp:419/9355 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2025
0009-0009-5396-5555ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › statistical genetics
genomic prediction
0.912025
PTL-PRS: an R package for transfer learning of polygenic risk scores with pseudovalidation · Bioinform. 2025
Bioinformatics and computational biology › statistical genetics › genomic prediction
polygenic risk score
0.912025
PTL-PRS: an R package for transfer learning of polygenic risk scores with pseudovalidation · Bioinform. 2025

Methods — techniques the papers use, named apart from their topics

transfer learning · 0.9pseudovalidation · 0.9
YearPublicationVenuePosition
2025 PTL-PRS: an R package for transfer learning of polygenic risk scores with pseudovalidation
abstract
SUMMARY: Polygenic risk scores (PRSs) are essential tools for predicting individual phenotypic risk but often lack accuracy in non-European ancestry groups. Transfer Learning for Polygenic Risk Scores (TL-PRS) addresses this challenge by leveraging European PRSs to improve prediction in underrepresented ancestries but requires privacy-sensitive individual-level data and has low computational efficiency. Therefore, we introduce Pseudovalidated Transfer Learning for PRS (PTL-PRS), an extension of TL-PRS that incorporates pseudovalidation to eliminate the need for individual-level data and includes further software optimization. For pseudovalidation, PTL-PRS generates pseudo-summary statistics for training and validation and evaluates model performance with the pseudo-R2 metric. To improve computational efficiency, PTL-PRS software was optimized with C++, blockwise early stopping, and direct genotype retrieval. Overall, PTL-PRS enhances usability while maintaining TL-PRS's predictive performance. AVAILABILITY AND IMPLEMENTATION: The PTL.PRS R package is publicly available on GitHub at https://github.com/bokeumcho/PTL.PRS. The summary statistics used in this paper are available in the public domain: UK Biobank (https://pheweb.org/UKB-TOPMed), PGS Catalog (https://www.pgscatalog.org), COVID-19 Host Genetics Initiative (https://www.covid19hg.org) and GenOMICC (https://genomicc.org/data).
Bokeum Cho, Seunggeun Lee
Bioinform.1