Minerals play a critical role in the advanced energy technologies necessary for decarbonization, but characterizing mineral deposits hidden underground remains costly and challenging. Inspired by recent progress in generative modeling, we develop a learning method which infers the locations of minerals by masking and infilling geospatial maps of resource availability. We demonstrate this technique using mineral data for the conterminous United States, and train performant models, with the best achieving Dice coefficients of 0.31 ± 0.01 and recalls of 0.22 ± 0.02 on test data at 1×1 sq mi spatial resolution. One major advantage of our approach is that it can easily incorporate auxiliary data sources for prediction which may be more abundant than mineral data. We highlight the capabilities of our model by adding input layers derived from geophysical sources, along with a nation-wide ground survey of soils originally intended for agronomic purposes. We find that employing such auxiliary features can improve inference performance, while also enabling model evaluation in regions with no recorded minerals.