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Konstantin Gilep

dblp:425/3066 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2025
0009-0009-2319-2213ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein structure prediction
protein complex structure prediction		 0.912025
AlphaPulldown2 - a general pipeline for high-throughput structural modeling · Bioinform. 2025
Bioinformatics and computational biology
protein structure prediction		 0.912025
AlphaPulldown2 - a general pipeline for high-throughput structural modeling · Bioinform. 2025

Methods — techniques the papers use, named apart from their topics

unifold · 0.9snakemake · 0.9alphalink2 · 0.9alphafold · 0.9
YearPublicationVenuePosition
2025 AlphaPulldown2 - a general pipeline for high-throughput structural modeling
abstract
SUMMARY: AlphaPulldown2 streamlines protein structural modeling by automating workflows, improving code adaptability, and optimizing data management for large-scale applications. It introduces an automated Snakemake pipeline, compressed data storage, support for additional modeling backends like UniFold and AlphaLink2, and a range of other improvements. These upgrades make AlphaPulldown2 a versatile platform for predicting both binary interactions and complex multi-unit assemblies. AVAILABILITY AND IMPLEMENTATION: AlphaPulldown2 is freely available at https://github.com/KosinskiLab/AlphaPulldown.
Dmitry Molodenskiy, Valentin J. Maurer, Dingquan Yu, Grzegorz Chojnowski, Stefan Bienert, Gerardo Tauriello, Konstantin Gilep, Torsten Schwede, Jan Kosinski
 Bioinform.7