Demo Data from EDBT 2026 / reviewers in the wild / expert
Pauline Hermans
dblp:425/7655
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2025
0009-0008-9398-9992ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › molecular property prediction › protein property prediction
protein mutation effect prediction |
0.9 | 1 | 2025 | Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins · Bioinform. 2025 |
Bioinformatics and computational biology
protein structure analysis |
0.9 | 1 | 2025 | Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins · Bioinform. 2025 |
Methods — techniques the papers use, named apart from their topics
relative solvent accessibility · 0.9log-odd ratio · 0.9evolutionary score · 0.9
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteinsabstractMOTIVATION: Predicting how mutations impact protein biophysical properties remains a significant challenge in computational biology. In recent years, numerous predictors, primarily deep learning models, have been developed to address this problem; however, issues such as their lack of interpretability and limited accuracy persist. RESULTS: We showed that a simple evolutionary score, based on the log-odd ratio of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility, performs on par with or slightly outperforms most of the benchmarked predictors, many of which are considerably more complex. The evaluation is performed on mutations from the ProteinGym deep mutational scanning dataset collection, which measures various properties such as stability, activity or fitness. This raises further questions about what these complex models actually learn and highlights their limitations in addressing prediction of mutational landscape. AVAILABILITY AND IMPLEMENTATION: The RSALOR model is available as a user-friendly Python package that can be installed from the PyPI repository. The code is freely available at https://github.com/3BioCompBio/RSALOR. Matsvei Tsishyn, Pauline Hermans, Marianne Rooman, Fabrizio Pucci |
Bioinform. | 2 |