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Matheus P. M. de Castro

dblp:425/8753 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
genomics
0.812024
RCPedia: a global resource for studying and exploring retrocopies in diverse species · Bioinform. 2024
Bioinformatics and computational biology › genomics
transposable elements
0.812024
RCPedia: a global resource for studying and exploring retrocopies in diverse species · Bioinform. 2024

Methods — techniques the papers use, named apart from their topics

database integration · 0.8
YearPublicationVenuePosition
2024 RCPedia: a global resource for studying and exploring retrocopies in diverse species
abstract
MOTIVATION: Gene retrocopies arise from the reverse transcription and genomic insertion of processed mRNA transcripts. These elements have significantly contributed to genetic diversity and novelties throughout the evolution of many species. However, the study of retrocopies has been challenging, owing to the absence of comprehensive, complete, and user-friendly databases for diverse species. RESULTS: Here, we introduce an improved version of RCPedia, an integrative database meticulously designed for the study of retrocopies. RCPedia offers an extensive catalog of retrocopies identified across 44 species, which includes 13 primates, 4 rodents, 6 chiropterans, 12 other mammals, 4 birds, turtles, lizards, frogs, zebrafish, and Drosophila. The database offers the most complete compilation of retrocopies per species, accompanied by detailed genomic annotations, expression data, and links to other data portals. Furthermore, RCPedia features a streamlined representation of data and an efficient querying system, establishing it as an invaluable tool for researchers in the fields of genomics, evolutionary biology, and transposable elements (TEs). In summary, RCPedia aims to enhance the investigation of retrocopies and their pivotal roles in shaping the genomic landscapes of diverse species. AVAILABILITY AND IMPLEMENTATION: RCPedia is available at https://www.rcpediadb.org.
Helena B. Conceição, Rafael L. V. Mercuri, Matheus P. M. de Castro, Daniel T. Ohara, Gabriela D. A. Guardia, Pedro A. F. Galante
Bioinform.3