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Hannah Swahn

dblp:426/1389 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › single-cell analysis
single-cell transcriptomics
0.812024
vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level · Bioinform. 2024
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics
0.812024
vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level · Bioinform. 2024
Bioinformatics and computational biology › gene expression analysis
gene expression visualization
0.212024
vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level · Bioinform. 2024

Methods — techniques the papers use, named apart from their topics

imputation · 0.8dimensionality reduction · 0.8
YearPublicationVenuePosition
2024 vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level
abstract
SUMMARY: vSPACE is a web-based application presenting a spatial representation of scRNAseq data obtained from human articular cartilage by emulating the concept of spatial transcriptomics technology, but virtually. This virtual 2D plot presentation of human articular cartage cells generates several zonal distribution patterns, for one or multiple genes at a time, revealing patterns that scientists can appreciate as imputed spatial distribution patterns along the zonal axis. AVAILABILITY AND IMPLEMENTATION: vSPACE is implemented in Python Dash as a web-based toolbox designed for data visualization of zonal gene expression patterns in articular cartilage chondrocytes. This tool is freely accessible at: https://vspace.cse.uconn.edu/The source code and extra materials for this service can be downloaded from: https://github.com/zhacheny/vSPACE.
Chenyu Zhang 0007, Honglin Wang, Yeonsoo Chung, Seung-Hyun Hong, Merissa Olmer, Hannah Swahn, Martin Lotz, Peter F. Maye, David W. Rowe, Dong-Guk Shin
Bioinform.6