Ibrahim Alsaggaf

dblp:426/1483 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2025
0009-0007-7379-5915ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › single-cell analysis
cell type annotation
0.912025
Less is more: improving cell-type identification with augmentation-free single-cell RNA-Seq contrastive learning · Bioinform. 2025
Bioinformatics and computational biology
contrastive learning
0.912025
Less is more: improving cell-type identification with augmentation-free single-cell RNA-Seq contrastive learning · Bioinform. 2025
Bioinformatics and computational biology › single-cell analysis › single-cell RNA sequencing
single-cell RNA-seq analysis
0.912025
Less is more: improving cell-type identification with augmentation-free single-cell RNA-Seq contrastive learning · Bioinform. 2025

Methods — techniques the papers use, named apart from their topics

representation learning · 0.9contrastive learning · 0.9
YearPublicationVenuePosition
2025 Less is more: improving cell-type identification with augmentation-free single-cell RNA-Seq contrastive learning
abstract
MOTIVATION: Cell-type identification is one of the most important tasks in single-cell RNA Sequencing (scRNA-Seq) analysis. Recent research has revealed contrastive learning's great potential in handling multiple cell-type identification tasks. RESULTS: In this work, we proposed a novel augmentation-free scRNA-Seq contrastive learning (AF-RCL) algorithm, which simplifies the conventional data augmentation operation and adopts a new contrastive learning loss function. A large-scale empirical evaluation suggests that AF-RCL not only outperformed other contrastive learning-based cell-type identification methods but also obtained state-of-the-art predictive performance compared with other well-known cell-type identification methods. Further analysis also shows AF-RCL's advantages in learning high-quality discriminative feature representations based on scRNA-Seq expression profiles. AVAILABILITY AND IMPLEMENTATION: The source code is available at https://doi.org/10.6084/m9.figshare.28830311.v1 and at https://github.com/ibrahimsaggaf/AFRCL. The pre-trained AF-RCL encoders can be downloaded from https://doi.org/10.5281/zenodo.15109736, and the scRNA-Seq datasets used in this work can be downloaded from https://doi.org/10.5281/zenodo.8087611.
Ibrahim Alsaggaf, Daniel W. A. Buchan, Cen Wan
Bioinform.1