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Sereina A. Herzog

dblp:426/4711 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 77% Computational science and engineering · 23%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
population genetics
0.812024
Detection and quantification of introgression using Bayesian inference based on conjugate priors · Bioinform. 2024
Computational science and engineering
model selection
0.212024
Detection and quantification of introgression using Bayesian inference based on conjugate priors · Bioinform. 2024

Methods — techniques the papers use, named apart from their topics

conjugate prior · 0.8coalescent simulation · 0.8bayesian inference · 0.8
YearPublicationVenuePosition
2024 Detection and quantification of introgression using Bayesian inference based on conjugate priors
abstract
SUMMARY: Introgression (the flow of genes between species) is a major force structuring the evolution of genomes, potentially providing raw material for adaptation. Here, we present a versatile Bayesian model selection approach for detecting and quantifying introgression, df-BF, that builds upon the recently published distance-based df statistic. Unlike df, df-BF accounts for the number of variant sites within a genomic region. The underlying model parameter of our df-BF method, here denoted as dfθ, accurately quantifies introgression, and the corresponding Bayes Factors (df-BF) enables weighing the strength of evidence for introgression. To ensure fast computation, we use conjugate priors with no need for computationally demanding MCMC iterations. We compare our method with other approaches including df, fd, Dp, and Patterson's D using a wide range of coalescent simulations. Furthermore, we showcase the applicability of df-BF and dfθ using whole-genome mosquito data. Finally, we integrate the new method into the powerful genomics R-package PopGenome. AVAILABILITY AND IMPLEMENTATION: The presented methods are implemented within the R-package PopGenome (https://github.com/pievos101/PopGenome) and the simulation as the application results can be reproduced from the source code available from a dedicated GitHub repository (https://github.com/pievos101/Introgression-Simulation).
Bastian Pfeifer, Durrell D. Kapan, Sereina A. Herzog
Bioinform.3