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Chrysa Nikopoulou

dblp:428/4017 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2026
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › transcriptomics › spatial transcriptomics
spatially variable gene detection
1.012026
A spectral dimension reduction technique that improves pattern detection in multivariate spatial data · Bioinform. 2026
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics
1.012026
A spectral dimension reduction technique that improves pattern detection in multivariate spatial data · Bioinform. 2026
Bioinformatics and computational biology
gene expression analysis
0.312026
A spectral dimension reduction technique that improves pattern detection in multivariate spatial data · Bioinform. 2026
Bioinformatics and computational biology
transcriptomics
0.312026
A spectral dimension reduction technique that improves pattern detection in multivariate spatial data · Bioinform. 2026

Methods — techniques the papers use, named apart from their topics

spectral dimension reduction · 1.0principal component analysis · 1.0moran's i · 1.0
YearPublicationVenuePosition
2026 A spectral dimension reduction technique that improves pattern detection in multivariate spatial data
abstract
MOTIVATION: We introduce a statistical approach for pattern recognition in multivariate spatial transcriptomics data. RESULTS: Our algorithm constructs a projection of the data onto a low-dimensional feature space which is optimal in maximizing Moran's I, a measure of spatial dependency. This projection mitigates non-spatial variation and outperforms principal components analysis for pre-processing. Patterns of spatially variable genes are well represented in this feature space, and their projection can be shown to be a denoising operation. Our framework does not require any parameter tuning, and it furthermore gives rise to a calibrated, powerful test of spatial gene expression. AVAILABILITY AND IMPLEMENTATION: The algorithm is implemented in the open source software R and is available at https://github.com/IMSBCompBio/SpaCo.
David Köhler, Niklas Kleinenkuhnen, Kiarash Rastegar, Till Baar, Chrysa Nikopoulou, Vangelis Kondylis, Vlada Milchevskaya, Matthias Schmid, Peter Tessarz, Achim Tresch
Bioinform.5