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Akhatov Akmal

dblp:431/2125 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2026
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › cancer genomics › copy number analysis
copy number variation detection
1.012026
PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework · Bioinform. 2026
Bioinformatics and computational biology
genomics
1.012026
PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework · Bioinform. 2026
Bioinformatics and computational biology
computational oncology
0.312026
PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework · Bioinform. 2026

Methods — techniques the papers use, named apart from their topics

ridge regression · 1.0kernel-based correction · 1.0circular binary segmentation · 1.0
YearPublicationVenuePosition
2026 PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework
abstract
MOTIVATION: Accurate detection of copy number variations (CNVs) from targeted panel sequencing remains challenging due to limited genomic coverage and pronounced sample-specific biases. Existing normalization strategies, including baseline-cohort, matched-control, and single-sample approaches, often struggle to balance noise suppression with adaptability, leading to inconsistent performance across heterogeneous samples. RESULTS: We present PScnv, a personalized self-normalizing framework for robust CNV detection from panel sequencing data. PScnv integrates a pre-built panel-of-normals (PoN) with sample-intrinsic stable chromosomes through ridge-regression normalization to generate individualized log2 ratio profiles with reduced systematic variation. CNVs are then identified using a hierarchical multi-phase segmentation pipeline incorporating z-score pre-partitioning, kernel-based correction, and circular binary segmentation. In 139 clinical tumor samples with orthogonal FISH validation at MET, ERBB2, and MTAP, PScnv showed improved accuracy and robustness over existing methods that do not require patient-matched normal samples, provided that a pre-built PoN cohort is available. AVAILABILITY: Source code is available for academic use at https://github.com/lvws/PScnv.
Xuwen Wang, Zhili Chang, Wansheng Lv, Akhatov Akmal, Xamidov Munis, Xunbiao Liu, Shenjie Wang, Xiaoyan Zhu 0003, Chong Du, Shuqun Zhang, Jiayin Wang 0002
Bioinform.4