EDBT 2026 Demo / reviewers in the wild / expert
Michael A Kalwat
dblp:437/1661
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2026
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 67% Computational science and engineering · 33% |
Topics — the 3 heaviest of 3, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Computational science and engineering
domain adaptation |
1.0 | 1 | 2026 | Identification of high-risk cells in single-cell spatially resolved transcriptomics data using Diagnostic Evidence GAuge of Single-cells with spatial smoothing · Bioinform. 2026 |
Bioinformatics and computational biology › single-cell analysis
single-cell RNA sequencing |
1.0 | 1 | 2026 | Identification of high-risk cells in single-cell spatially resolved transcriptomics data using Diagnostic Evidence GAuge of Single-cells with spatial smoothing · Bioinform. 2026 |
Bioinformatics and computational biology › transcriptomics › spatial transcriptomics
spatial transcriptomics analysis |
1.0 | 1 | 2026 | Identification of high-risk cells in single-cell spatially resolved transcriptomics data using Diagnostic Evidence GAuge of Single-cells with spatial smoothing · Bioinform. 2026 |
Methods — techniques the papers use, named apart from their topics
latent representation learning · 1.0domain adaptation · 1.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Identification of high-risk cells in single-cell spatially resolved transcriptomics data using Diagnostic Evidence GAuge of Single-cells with spatial smoothingabstractSUMMARY: The examination of high-risk cells and regions in tissue samples from spatially resolved transcriptomics platforms offers meaningful insights into specific disease processes. For existing methods, while cell types or clusters can be identified and associated with disease attributes, individual cells are unable to be associated in the same manner. METHOD: Diagnostic Evidence Gauge of Single-Cells and Spatial Transcriptomics (DEGAS) solves the above problem by employing latent representations of gene expression data and domain adaptation to transfer disease attributes from patients to individual cells from single-cell RNA sequencing datasets. In this research, we present and evaluate DEGAS's versatility in adapting to data arising from various single-cell spatially resolved transcriptomics (scSRT) platforms. DEGAS successfully identified high-risk cells and regions in liver hepatocellular carcinoma and skin cutaneous melanoma, which were validated through known markers. Additionally, DEGAS was applied to our newly generated Type II Diabetes Xenium dataset, revealing high-risk cells within the tissue samples. AVAILABILITY AND IMPLEMENTATION: The DEGAS software can be accessed at https://github.com/tsteelejohnson91/DEGAS. For the updated smoothing functions and associated codes, visit https://github.com/dchatter04/DEGAS-Spatial-Smoothing, which is archived at https://doi.org/10.5281/zenodo.18510221. Sources for the datasets reviewed are detailed in their respective sections. A description of some datasets, along with extra tables and figures, is provided in the Supplementary Materials file. Our newly generated Xenium data for Type II Diabetes can be found at https://doi.org/10.7303/syn68699752. Debolina Chatterjee, Justin L. Couetil, Kun Huang 0001, Chao Chen 0012, Jie Zhang 0010, Michael A Kalwat, Travis S. Johnson |
Bioinform. | 7 |