Demo Data from EDBT 2026 / reviewers in the wild / expert
Gyujin Son
dblp:439/0311
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2026
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% | |
| Artificial intelligence
1 paper |
Information extraction and text analysis · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › biomedical text mining
biomedical named entity recognition |
1.0 | 1 | 2026 | DA-BioNER: data augmentation based on few-shot learning and distant supervision for biomedical named entity recognition · Bioinform. 2026 |
Natural language and speech › Information extraction and text analysis
named entity recognition |
0.3 | 1 | 2026 | DA-BioNER: data augmentation based on few-shot learning and distant supervision for biomedical named entity recognition · Bioinform. 2026 |
Methods — techniques the papers use, named apart from their topics
large language model · 2.0few-shot learning · 2.0distant supervision · 2.0annotation refinement · 2.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | DA-BioNER: data augmentation based on few-shot learning and distant supervision for biomedical named entity recognitionabstractMOTIVATION: Named entity recognition (NER) is a fundamental component of structured knowledge extraction, yet its effectiveness in emerging domains remains by the scarcity of high-quality, domain-specific annotated corpora. Although data augmentation and distant supervision have been explored to alleviate this issue, existing methods often introduce limited entity diversity, noisy labels, or disrupt contextual integrity, thereby limiting their generalization ability in low-resource settings. RESULTS: In this study, we propose DA-BioNER, a context-preserving data expansion framework for biomedical NER. DA-BioNER combines multiple base NER models trained on few-shot data to provide coarse annotations, followed by refinement using a large language model (LLM) guided by global biomedical knowledge. Unlike generation-based augmentation methods that synthesize new sentences, DA-BioNER performs annotation refinement within existing sentences, preserving both syntactic structure and semantic context. By constraining the role of LLM to refinement rather than open-ended generation, the framework effectively reduces hallucination while improving label precision and consistency. We evaluate DA-BioNER on three benchmark datasets (NCBI-Disease, BC5CDR, and BioRED), under low-resource conditions. In 40-shot settings, DA-BioNER achieves F1-scores of 0.750, 0.795, and 0.799, respectively, outperforming state-of-the-art methods, including LSMS, DAGA, and MELM, by up to 0.32. Under more extreme few-shot settings, DA-BioNER further improves F1-scores by up to 0.08, while generating an average of 1,391 additional unique entities, substantially enriching training diversity. These results demonstrate that DA-BioNER provides a scalable and adaptable solution for robust biomedical NER, particularly in domain adaptation and low-resource scenarios. AVAILABILITY: DA-BioNER is publicly available at https://github.com/DMnBI/DA-BioNER. Yesol Park, Gyujin Son, Taeuk Kim, Mina Rho |
Bioinform. | 2 |