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Jed W. Pitera

dblp:44/2672 · also Jed Pitera · DBLP profile ↗
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7ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 4 · 1 since 2021Artificial intelligence and machine learning · 3Databases, data management, data science and information retrieval · 2Graphics, computer vision, multimedia, augmented reality and games · 1Theory of computation · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
2 papers
Graph learning · 50% Information extraction and text analysis · 25% Generative modeling · 25%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Computational science and engineering · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Performance modeling and evaluation · 62% Electronic design automation · 38%
Databases, data mining, and information retrieval
1 paper
Information retrieval · 100%

Topics — the 10 heaviest of 10, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Graph learning › graph neural network
graph convolutional network
0.412020
Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network · AAAI 2020
Machine learning › Graph learning
label attention
0.412020
Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network · AAAI 2020
Machine learning › Generative modeling › molecular generation
molecular graph generation
0.412020
Molecular Inverse-Design Platform for Material Industries · KDD 2020
Natural language and speech › Information extraction and text analysis › text classification
multi-label text classification
0.412020
Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network · AAAI 2020
Computational science and engineering › materials informatics
inverse molecular design
0.412020
Molecular Inverse-Design Platform for Material Industries · KDD 2020
Computational science and engineering › materials science
materials discovery
0.412020
Molecular Inverse-Design Platform for Material Industries · KDD 2020
Information retrieval › document processing › document analysis › document representation
document representation learning
0.112020
Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network · AAAI 2020
Performance modeling and evaluation › simulation
monte carlo methods
0.112009
Oil fields, hedge funds, and drugs · DAC 2009
Electronic design automation › timing analysis
statistical timing analysis
0.012009
Oil fields, hedge funds, and drugs · DAC 2009
Electronic design automation
yield analysis
0.012009
Oil fields, hedge funds, and drugs · DAC 2009

Methods — techniques the papers use, named apart from their topics

substructure-based feature encoding · 0.9non-local attention · 0.9graph generation · 0.9graph convolutional network · 0.9monte carlo method · 0.1
YearPublicationVenuePosition
2024 Quantum-centric supercomputing for materials science: A perspective on challenges and future directions
Yuri Alexeev, Maximilian Amsler, Marco Antonio Barroca, Sanzio Bassini, Torey Battelle, Daan Camps, David Casanova, Young Jay Choi, Fred Chong, Charles Chung, Christopher Codella, Antonio D. Córcoles, James Cruise, Alberto Di Meglio, Ivan Duran, Thomas Eckl, Sophia E. Economou, Stephan J. Eidenbenz, Bruce Elmegreen, Clyde Fare, Ismael Faro, Cristina Sanz Fernández, Rodrigo Neumann Barros Ferreira, Keisuke Fuji, Bryce Fuller, Laura Gagliardi, Giulia Galli, Jennifer R. Glick, Isacco Gobbi, Pranav Gokhale, Salvador de la Puente Gonzalez, Johannes Greiner, William Gropp, Michele Grossi, Emanuel Gull, Burns Healy, Matthew R. Hermes, Benchen Huang, Travis S. Humble, Nobuyasu Ito, Artur F. Izmaylov, Ali Javadi-Abhari, Douglas M. Jennewein, Shantenu Jha, Bert de Jong, Petar Jurcevic, William M. Kirby, Stefan Kister, Masahiro Kitagawa, Joel Klassen, Katherine Klymko, Kwangwon Koh, Masaaki Kondo, Doga Murat Kürkçüoglu, Krzysztof Kurowski, Teodoro Laino, Ryan Landfield, Matthew L. Leininger, Vicente Leyton-Ortega, Ang Li 0006, Meifeng Lin, Junyu Liu, Nicolás Lorente, André Luckow, Simon Martiel, Francisco Martín-Fernández, Margaret Martonosi, Claire Marvinney, Arcesio Castañeda Medina, Dirk Merten, Antonio Mezzacapo, Kristel Michielsen, Abhishek Mitra, Tushar Mittal, Kyungsun Moon, Joel Moore, Sarah Mostame, Mario Motta, Young-Hye Na, Yunseong Nam, Prineha Narang, Yu-ya Ohnishi, Daniele Ottaviani, Matthew Otten, Scott Pakin, Vincent R. Pascuzzi, Edwin Pednault, Tomasz Piontek, Jed W. Pitera, Patrick Rall, Gokul Subramanian Ravi, Niall Robertson, Matteo A. C. Rossi, Piotr Rydlichowski, Hoon Ryu, Georgy Samsonidze, Mitsuhisa Sato, Nishant Saurabh, Kunal Sharma, Soyoung Shin, George Slessman, Mathias Steiner, Iskandar Sitdikov, In-Saeng Suh, Eric D. Switzer, Joel Thompson, Synge Todo, Minh C. Tran, Dimitar Trenev, Christian Trott, Huan-Hsin Tseng, Norm M. Tubman, Esin Tureci, David García Valiñas, Sofia Vallecorsa, Christopher Wever, Konrad W. Wojciechowski, Xiaodi Wu 0001, Shinjae Yoo, Nobuyuki Yoshioka, Victor Wen-zhe Yu, Seiji Yunoki, Sergiy Zhuk, Dmitry Zubarev
Future Gener. Comput. Syst.91
2020 Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network
abstract
Patent categorization, which is to assign multiple International Patent Classification (IPC) codes to a patent document, relies heavily on expert efforts, as it requires substantial domain knowledge. When formulated as a multi-label text classification (MTC) problem, it draws two challenges to existing models: one is to learn effective document representations from text content; the other is to model the cross-section behavior of label set. In this work, we propose a label attention model based on graph convolutional network. It jointly learns the document-word associations and word-word co-occurrences to generate rich semantic embeddings of documents. It employs a non-local attention mechanism to learn label representations in the same space of document representations for multi-label classification. On a large CIRCA patent database, we evaluate the performance of our model and as many as seven competitive baselines. We find that our model outperforms all those prior state of the art by a large margin and achieves high performance on P@k and nDCG@k.
Pingjie Tang, Meng Jiang 0001, Bryan (Ning) Xia, Jed W. Pitera, Jeffrey Welser, Nitesh V. Chawla
AAAI4
2020 Molecular Inverse-Design Platform for Material Industries
abstract
The discovery of new materials has been the essential force which brings a discontinuous improvement to industrial products' performance. However, the extra-vast combinatorial design space of material structures exceeds human experts' capability to explore all, thereby hampering material development. In this paper, we present a material industry-oriented web platform of an AI-driven molecular inverse-design system, which automatically designs brand new molecular structures rapidly and diversely. Different from existing inverse-design solutions, in this system, the combination of substructure-based feature encoding and molecular graph generation algorithms allows a user to gain high-speed, interpretable, and customizable design process. Also, a hierarchical data structure and user-oriented UI provide a flexible and intuitive workflow. The system is deployed on IBM's and our client's cloud servers and has been used by 5 partner companies. To illustrate actual industrial use cases, we exhibit inverse-design of sugar and dye molecules, that were carried out by experimental chemists in those client companies. Compared to a general human chemist's standard performance, the molecular design speed was accelerated more than 10 times, and greatly increased variety was observed in the inverse-designed molecules without loss of chemical realism.
Seiji Takeda, Toshiyuki Hama, Hsiang-Han Hsu, Victoria A. Piunova, Dmitry Zubarev, Dan Sanders 0002, Jed W. Pitera, Makoto Kogoh, Takumi Hongo, Yenwei Cheng, Wolf Bocanett, Hideaki Nakashika, Akihiro Fujita, Yuta Tsuchiya, Katsuhiko Hino, Kentaro Yano, Shuichi Hirose, Hiroki Toda, Yasumitsu Orii, Daiju Nakano
KDD7
2017 Materials Science Literature-Patent Relevance Search: A Heterogeneous Network Analysis Approach
abstract
In recent decades, materials science literature and patents have grown exponentially. This has also contributed to an ever-growing challenge whether the literature is current, as there can be a gap between when the patent was filed and when it was approved. Moreover, it is difficult to ensure that a patent cites the appropriate prior art due to variety and volume of materials science data, especially when it is in two separate sources that have different curation mechanisms and purpose - publications and patents. The existing relational database schema, generally used to store publications, also presents challenges given the strict tabular schema, which may not be appropriate for organizing and querying highly interconnected information about materials in these publications and patents. For example, elements are chemically combined to form a compound, which can then be converted to other compounds via chemical reactions. Furthermore, relational database is not designed for handling combining data from multiple sources and with various formats, thus it makes discover relevance between publications and patents become difficult. In order to explore an alternative approach to represent materials data and combine data from multiple sources into the same repository, in this work, we propose a solution to integrate data from Open Quantum Materials Database (OQMD) and patent data from USPTO1 database into a network and named it heterogeneous materials information network (HMIN). We generalize prior work which based on using meta path-based topological features to explore the network, and we propose features to identify network noise and investigate relatedness between different-typed objects to meet our application needs. We built several machine learning models by using these features to explore relevance between materials science publications and patents. Experiment results show that HMIN can help researchers effectively discover related publications and patents originally kept in different sources. Our work exhibits to materials community a new way of appro-priately representing materials data and discovering connections between data from multiple sources.
Pingjie Tang, Jed W. Pitera, Dmitry Zubarev, Nitesh V. Chawla
DSAA2
2009 Oil fields, hedge funds, and drugs
abstract
Statistical analysis is a fundamental method in analysis, design, and optimization of large systems with uncertainties. It is being applied in drug development, analyzing financial markets, search for new oil fields, and many more areas. As the silicon process technology scales to its limits, uncertainty plays an increasing role and has made its way into tools such as yield analysis, statistical time analysis, etc. In this educational panel, we will start with a short tutorial on Monte Carlo methods including their use in EDA. Three experts from distinct application fields will then follow and discuss their experience in using Monte Carlo methods for solving large-scale problems in their domain. It may come as a surprise to some attendees of DAC to learn how much commonality there is between methods used in EDA and other field that seem far-fetched.
Patrick Groeneveld, Rob A. Rutenbar, Jed W. Pitera, Erik C. Carlson
DAC3
2006 Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
abstract
The replica exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. However, replica exchange can become computationally expensive for large-scale studies, due to the number of replicas needed as well as interprocess or communication requirements both between and within replicas. In this paper, we discuss an implementation of replica exchange molecular dynamics on Blue Gene/L for performing large scale simulation studies of systems of biological interest. The algorithm is tuned with an awareness of the physical network topology and hardware performance features of the Blue Gene/L architecture. Performance measurements for replica exchange using the blue matter molecular dynamics application are presented on Blue Gene/L hardware with up to 256 replicas simulated on 8,192 compute nodes. Both scalability and performance are achieved with this implementation.
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain
IPDPS3
2003 Blue Matter, an application framework for molecular simulation on Blue Gene
Blake G. Fitch, Robert S. Germain, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Yuk Yin Sham, Frank Suits, William C. Swope, T. J. Christopher Ward, Yuriy Zhestkov, Ruhong Zhou
J. Parallel Distributed Comput.4