Signed graphs are powerful models for representing complex relations with both positive and negative connections. Recently, Signed Graph Neural Networks (SGNNs) have emerged as potent tools for analyzing such graphs. To our knowledge, no prior research has been conducted on devising a training plan specifically for SGNNs. The prevailing training approach feeds samples (edges) to models in a random order, resulting in equal contributionsfrom each sample during the training process, but fails to account for varying learning difficulties based on the graph's structure. We contend that SGNNs can benefit from a curriculum that progresses from easy to difficult, similar to human learning. The main challenge is evaluating the difficulty of edges in a signed graph. Weaddress this by theoretically analyzing the difficulty of SGNNs in learning adequate representations for edges in unbalanced cycles and propose a lightweight difficulty measurer. This forms the basis for our innovative Curriculum representation learning framework for Signed Graphs, referred to as CSG. The process involves using the measurer to assign difficulty scores to training samples, adjusting their order using a scheduler and training the SGNN model accordingly. We empirically our approach on six real-world signed graph datasets. Our method demonstrates remarkable results, enhancing the accuracy of popular SGNN models by up to 23.7 % and showing a reduction of 8.4 % in standard deviation, enhancing model stability. Our implementation is available in PyTorch (https://github.com/Alex-Zeyu/CSG).

Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an urgent need for interpretability methods to establish trustworthiness in model-driven decisions. For genetic researchers, interpretable insights derived from these models hold significant value in providing novel perspectives for understanding biological processes. Current interpretability analyses in genomics predominantly rely on intuition and experience rather than rigorous theoretical foundations. In this review, we categorize interpretability methods into input-based and model-based approaches, while critically evaluating their limitations through concrete biological application scenarios. Furthermore, we establish theoretical underpinnings to elucidate the origins of these constraints through formal mathematical demonstrations, aiming to assist genetic researchers in better understanding and designing models in the future. Finally, we provide feasible suggestions for future research on interpretability in the field of genetics.

Zero-shot Relation Triplet Extraction (ZeroRTE) aims to extract relation triplets from texts containing unseen relation types. This capability benefits various downstream information retrieval (IR) tasks. The primary challenge lies in enabling models to generalize effectively to unseen relation categories. Existing approaches typically leverage the knowledge embedded in pre-trained language models to accomplish the generalization process. However, these methods focus solely on fitting the training data during training, without specifically improving the model's generalization performance, resulting in limited generalization capability. For this reason, we explore the integration of bi-level optimization (BLO) with pre-trained language models for learning generalized knowledge directly from the training data, and propose a generative meta-learning framework which exploits the 'learning-to-learn' ability of meta-learning to boost the generalization capability of generative models.

Signed graph clustering is a critical technique for discovering community structures in graphs that exhibit both positive and negative relationships. We have identified two significant challenges in this domain: i) existing signed spectral methods are highly vulnerable to noise, which is prevalent in real-world scenarios; ii) the guiding principle "an enemy of my enemy is my friend", rooted in Social Balance Theory, often narrows or disrupts cluster boundaries in mainstream signed graph neural networks. Addressing these challenges, we propose the Deep Signed Graph Clustering framework (DSGC), which leverages Weak Balance Theory to enhance preprocessing and encoding for robust representation learning. First, DSGC introduces Violation Sign-Refine to denoise the signed network by correcting noisy edges with high-order neighbor information. Subsequently, Density-based Augmentation enhances semantic structures by adding positive edges within clusters and negative edges across clusters, following Weak Balance principles. The framework then utilizes Weak Balance principles to develop clustering-oriented signed neural networks to broaden cluster boundaries by emphasizing distinctions between negatively linked nodes. Finally, DSGC optimizes clustering assignments by minimizing a regularized clustering loss. Comprehensive experiments on synthetic and real-world datasets demonstrate DSGC consistently outperforms all baselines, establishing a new benchmark in signed graph clustering.

Positive and negative association prediction between gene and phenotype helps to illustrate the underlying mechanism of complex traits in organisms. The transcription and regulation activity of specific genes will be adjusted accordingly in different cell types, developmental timepoints, and physiological states. There are the following two problems in obtaining the positive/negative associations between gene and phenotype: (1) high-throughput DNA/RNA sequencing and phenotyping are expensive and time-consuming due to the need to process large sample sizes; (2) experiments introduce both random and systematic errors, and, meanwhile, calculations or predictions using software or models may produce noise. To address these two issues, we propose a Contrastive Signed Graph Diffusion Network, CSGDN, to learn robust node representations with fewer training samples to achieve higher link prediction accuracy. CSGDN uses a signed graph diffusion method to uncover the underlying regulatory associations between genes and phenotypes. Then, stochastic perturbation strategies are used to create two views for both original and diffusive graphs. Lastly, a multiview contrastive learning paradigm loss is designed to unify the node presentations learned from the two views to resist interference and reduce noise. We perform experiments to validate the performance of CSGDN in three crop datasets: Gossypium hirsutum, Brassica napus, and Triticum turgidum. The results show that the proposed model outperforms state-of-the-art methods by up to 9. 28% AUC for the prediction of link sign in the G. hirsutum dataset. The source code of our model is available at https://github.com/Erican-Ji/CSGDN.

Learnersourcing offers great potential for scalable education through student content creation. However, predicting student performance on learnersourced questions, which is essential for personalizing the learning experience, is challenging due to the inherent noise in student-generated data. Moreover, while conventional graph-based methods can capture the complex network of student and question interactions, they often fall short under cold start conditions where limited student engagement with questions yields sparse data. To address both challenges, we introduce an innovative strategy that synergizes the potential of integrating Signed Graph Neural Networks (SGNNs) and Large Language Model (LLM) embeddings. Our methodology employs a signed bipartite graph to comprehensively model student answers, complemented by a contrastive learning framework that enhances noise resilience. Furthermore, LLM's contribution lies in generating foundational question embeddings, proving especially advantageous in addressing cold start scenarios characterized by limited graph data. Validation across five real-world datasets sourced from the PeerWise platform underscores our approach's effectiveness. Our method outperforms baselines, showcasing enhanced predictive accuracy and robustness.

Signed graphs can model friendly or antagonistic relations where edges are annotated with a positive or negative sign. The main downstream task in signed graph analysis is $\textit{link sign prediction}$. Signed Graph Neural Networks (SGNNs) have been widely used for signed graph representation learning. While significant progress has been made in SGNNs research, two issues (i.e., graph sparsity and unbalanced triangles) persist in the current SGNN models. We aim to alleviate these issues through data augmentation ($\textit{DA}$) techniques which have demonstrated effectiveness in improving the performance of graph neural networks. However, most graph augmentation methods are primarily aimed at graph-level and node-level tasks (e.g., graph classification and node classification) and cannot be directly applied to signed graphs due to the lack of side information (e.g., node features and label information) in available real-world signed graph datasets. Random $\textit{DropEdge} $is one of the few $\textit{DA}$ methods that can be directly used for signed graph data augmentation, but its effectiveness is still unknown. In this paper, we first provide the generalization bound for the SGNN model and demonstrate from both experimental and theoretical perspectives that the random $\textit{DropEdge}$ cannot improve the performance of link sign prediction. Therefore, we propose a novel signed graph augmentation method, $\underline{S}$igned $\underline{G}$raph $\underline{A}$ugmentation framework (SGA). Specifically, SGA first integrates a structure augmentation module to detect candidate edges solely based on network information. Furthermore, SGA incorporates a novel strategy to select beneficial candidates. Finally, SGA introduces a novel data augmentation perspective to enhance the training process of SGNNs. Experiment results on six real-world datasets demonstrate that SGA effectively boosts the performance of diverse SGNN models, achieving improvements of up to 32.3\% in F1-micro for SGCN on the Slashdot dataset in the link sign prediction task.

Unsupervised/self-supervised graph neural networks (GNN) are susceptible to the inherent randomness in the input graph data, which adversely affects the model's performance in downstream tasks. In this paper, we propose USER, an unsupervised and robust version of GNN based on structural entropy, to alleviate the interference of graph perturbations and learn appropriate representations of nodes without label information. To mitigate the effects of undesirable perturbations, we analyze the property of intrinsic connectivity and define the intrinsic connectivity graph. We also identify the rank of the adjacency matrix as a crucial factor in revealing a graph that provides the same embeddings as the intrinsic connectivity graph. To capture such a graph, we introduce structural entropy in the objective function. Extensive experiments conducted on clustering and link prediction tasks under random-perturbation and meta-attack over three datasets show that USER outperforms benchmarks and is robust to heavier perturbations.

Judgment summaries are beneficial for legal practitioners to comprehend and retrieve case law efficiently. Unlike summaries in general domains, e.g., news, judgment summaries often require a clear structure. Such a structure helps readers grasp the information contained in the summary and reduces information loss. To the best of our knowledge, none of the existing text summarizers can generate summaries aligned with the summary structure in the legal domain. Inspired by this observation, this paper introduces a Summary Structure-Enhanced (SSE) method to synthesize structured summaries for legal documents. SSE can easily be incorporated into the Encoder-Decoder framework, which is commonly adopted in state-of-the-art text summarizers. Experiments on the datasets of New Zealand and Chinese judgments show that the proposed method consistently improves the performance of state-of-the-art summarizers in terms of Rouge scores.

This paper is the first to use contrastive learning to improve the robustness of graph representation learning for signed bipartite graphs, which are commonly found in social networks, recommender systems, and paper review platforms. Existing contrastive learning methods for signed graphs cannot capture implicit relations between nodes of the same type in signed bipartite graphs, which have two types of nodes and edges only connect nodes of different types. We propose a Signed Bipartite Graph Contrastive Learning (SBGCL) method to learn robust node representation while retaining the implicit relations between nodes of the same type. SBGCL augments a signed bipartite graph with a novel two-level graph augmentation method. At the top level, we maintain two perspectives of the signed bipartite graph, one presents the original interactions between nodes of different types, and the other presents the implicit relations between nodes of the same type. At the bottom level, we employ stochastic perturbation strategies to create two perturbed graphs in each perspective. Then, we construct positive and negative samples from the perturbed graphs and design a multi-perspective contrastive loss to unify the node presentations learned from the two perspectives. Results show proposed model is effective over state-of-the-art methods on real-world datasets.

Signed graphs model complex relations using both positive and negative edges. Signed graph neural networks (SGNN) are powerful tools to analyze signed graphs. We address the vulnerability of SGNN to potential edge noise in the input graph. Our goal is to strengthen existing SGNN allowing them to withstand edge noises by extracting robust representations for signed graphs. First, we analyze the expressiveness of SGNN using an extended Weisfeiler-Lehman (WL) graph isomorphism test and identify the limitations to SGNN over triangles that are unbalanced. Then, we design some structure-based regularizers to be used in conjunction with an SGNN that highlight intrinsic properties of a signed graph. The tools and insights above allow us to propose a novel framework, Robust Signed Graph Neural Network (RSGNN), which adopts a dual architecture that simultaneously denoises the graph while learning node representations. We validate the performance of our model empirically on four real-world signed graph datasets, i.e., Bitcoin_OTC, Bitcoin_Alpha, Epinion and Slashdot, RSGNN can clearly improve the robustness of popular SGNN models. When the signed graphs are affected by random noise, our method outperforms baselines by up to 9.35% Binary-F1 for link sign prediction. Our implementation is available in PyTorch1.

With the advancement in energy harvesting in terms of wireless charging techniques, it provides a novel way to solve traditional energy constraint problems in Wireless Sensor Networks (WSNs). Renewable energy such as solar, wind, and geo-thermal energy is converted to energy-storage and further use via harvest-then-transmit strategy. This article introduces a two-layer sleep scheduling system in energy-harvesting WSNs with an aim to satisfy sustainable throughput by analysis and optimization of network performance. Evaluation results provide a typical demonstration of how to obtain the appropriate value of key parameters according to specific requirement.