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Evangelia I. Zacharaki

dblp:47/6145 · DBLP profile ↗
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30ranked-venue papers
5as first author
7since 2021 · last 2024
0000-0001-8228-0437ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 19 · 5 first-author · 3 since 2021Graphics, computer vision, multimedia, augmented reality and games · 7 · 1 first-author · 3 since 2021Artificial intelligence and machine learning · 6 · 1 since 2021Systems, architecture and hardware · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Computer graphics and multimedia
3 papers
Computer animation and physical simulation · 63% Geometric modeling and processing · 21% Multimedia analysis and retrieval · 16%
Interdisciplinary, comprehensive, and emerging computing
2 papers
Medical and health informatics · 100%

Topics — the 9 heaviest of 12, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Computer animation and physical simulation
data-driven animation
0.812024
Machine Learning Approaches for 3D Motion Synthesis and Musculoskeletal Dynamics Estimation: A Survey · IEEE Trans. Vis. Comput. Graph. 2024
Computer animation and physical simulation › motion synthesis
human motion synthesis
0.812024
Machine Learning Approaches for 3D Motion Synthesis and Musculoskeletal Dynamics Estimation: A Survey · IEEE Trans. Vis. Comput. Graph. 2024
Multimedia analysis and retrieval
3d shape retrieval
0.612022
Broad-to-Narrow Registration and Identification of 3D Objects in Partially Scanned and Cluttered Point Clouds · IEEE Trans. Multim. 2022
Geometric modeling and processing
point set registration
0.612022
Broad-to-Narrow Registration and Identification of 3D Objects in Partially Scanned and Cluttered Point Clouds · IEEE Trans. Multim. 2022
Medical and health informatics › medical imaging › medical image analysis
medical image segmentation
0.312017
A Discrete MRF Framework for Integrated Multi-Atlas Registration and Segmentation · Int. J. Comput. Vis. 2017
Geometric modeling and processing
point cloud processing
0.212022
Broad-to-Narrow Registration and Identification of 3D Objects in Partially Scanned and Cluttered Point Clouds · IEEE Trans. Multim. 2022
Medical and health informatics › clinical decision-making
treatment planning
0.012002
In silico radiation oncology: combining novel simulation algorithms with current visualization techniques · Proc. IEEE 2002
Visualization and visual analytics
scientific visualization
0.012002
In silico radiation oncology: combining novel simulation algorithms with current visualization techniques · Proc. IEEE 2002
Virtual and augmented reality › immersive visualization
virtual reality visualization
0.012002
In silico radiation oncology: combining novel simulation algorithms with current visualization techniques · Proc. IEEE 2002

Methods — techniques the papers use, named apart from their topics

physics-based simulation · 0.8machine learning · 0.8similarity matching · 0.6multi-scale saliency extraction · 0.6markov random field · 0.6three-dimensional simulation · 0.1mathematical modeling · 0.1
YearPublicationVenuePosition
2024 Cooperative Saliency-Based Pothole Detection and AR Rendering for Increased Situational Awareness
abstract
Autonomous vehicles are expected to operate safely in real-life road conditions in the next years. Nevertheless, unanticipated events such as the existence of unexpected objects in the range of the road, can put safety at risk. The advancement of sensing and communication technologies and Internet of Things may facilitate the recognition of hazardous situations and information exchange in a cooperative driving scheme, providing new opportunities for the increase of collaborative situational awareness. Safe and unobtrusive visualization of the obtained information may nowadays be enabled through the adoption of novel Augmented Reality (AR) interfaces in the form of windshields. Motivated by these technological opportunities, we propose a saliency-based distributed, cooperative and rendering scheme for increasing the driver’s situational awareness through (i) automated negative obstacle (potholes) detection, (ii) AR visualization and (iii) information sharing (upcoming potential dangers) with other connected vehicles or road infrastructure. An extensive evaluation study using a variety of real datasets for pothole detection showed that the proposed method provides favorable results and features compared to other recent and relevant approaches.
Gerasimos Arvanitis, Nikolaos Stagakis, Evangelia I. Zacharaki, Konstantinos Moustakas
IEEE Trans. Intell. Transp. Syst.3
2024 Machine Learning Approaches for 3D Motion Synthesis and Musculoskeletal Dynamics Estimation: A Survey
abstract
The inference of 3D motion and dynamics of the human musculoskeletal system has traditionally been solved using physics-based methods that exploit physical parameters to provide realistic simulations. Yet, such methods suffer from computational complexity and reduced stability, hindering their use in computer graphics applications that require real-time performance. With the recent explosion of data capture (mocap, video) machine learning (ML) has started to become popular as it is able to create surrogate models harnessing the huge amount of data stemming from various sources, minimizing computational time (instead of resource usage), and most importantly, approximate real-time solutions. The main purpose of this paper is to provide a review and classification of the most recent works regarding motion prediction, motion synthesis as well as musculoskeletal dynamics estimation problems using ML techniques, in order to offer sufficient insight into the state-of-the-art and draw new research directions. While the study of motion may appear distinct to musculoskeletal dynamics, these application domains provide jointly the link for more natural computer graphics character animation, since ML-based musculoskeletal dynamics estimation enables modeling of more long-term, temporally evolving, ergonomic effects, while offering automated and fast solutions. Overall, our review offers an in-depth presentation and classification of ML applications in human motion analysis, unlike previous survey articles focusing on specific aspects of motion prediction.
Iliana Loi, Evangelia I. Zacharaki, Konstantinos Moustakas
IEEE Trans. Vis. Comput. Graph.2
2022 Dynamic contrast enhanced-magnetic resonance imaging radiomics combined with a hybrid adaptive neuro-fuzzy inference system-particle swarm optimization approach for breast tumour classification
abstract
Abstract The authors propose a method for breast dynamic contrast enhanced‐magnetic resonance imaging classification by combining radiomic texture analysis with a hybrid adaptive neuro‐fuzzy inference system (ANFIS)‐particle swarm optimization (PSO) classifier. The fast discrete curvelet transform is utilized as a decomposition scheme in multiple scales. The mean and entropy features extracted from the produced scheme are used as texture descriptors. Principal component analysis (PCA) involves reduction of the dimensionality of the initial feature set. The transformed feature vector is subsequently introduced to a hybrid ANFIS‐PSO classifier. The average overall classification power of the proposed hybrid ANFIS‐PSO classifier is comparatively assessed to that obtained using several classifiers (ANFIS, linear discriminant analysis, Naïve Bayes, artificial neural networks, random forest and support vector machine) by using the 70 training‐30 testing data ratio. The comparison performed highlights the superiority of the proposed methodology, thus underlying the potential of ANFIS‐PSO for the breast cancer diagnosis with a classification accuracy of 94%.
Alexia Tzalavra, Ioannis Andreadis, Kalliopi Dalakleidi, Fotios Constantinidis, Evangelia I. Zacharaki, Konstantina S. Nikita
Expert Syst. J. Knowl. Eng.5
2022 Joint Deformable Image Registration and ADC Map Regularization: Application to DWI-Based Lymphoma Classification
abstract
The Apparent Diffusion Coefficient (ADC) is considered an importantimaging biomarker contributing to the assessment of tissue microstructure and pathophy- siology. It is calculated from Diffusion-Weighted Magnetic Resonance Imaging (DWI) by means of a diffusion model, usually without considering any motion during image acquisition. We propose a method to improve the computation of the ADC by coping jointly with both motion artifacts in whole-body DWI (through group-wise registration) and possible instrumental noise in the diffusion model. The proposed deformable registration method yielded on average the lowest ADC reconstruction error on data with simulated motion and diffusion. Moreover, our approach was applied on whole-body diffusion weighted images obtained with five different b-values from a cohort of 38 patients with histologically confirmed lymphomas of three different types (Hodgkin, diffuse large B-cell lymphoma and follicular lymphoma). Evaluation on the real data showed that ADC-based features, extracted using our joint optimization approach classified lymphomas with an accuracy of approximately 78.6% (yielding a 11% increase in respect to the standard features extracted from unregistered diffusion-weighted images). Furthermore, the correlation between diffusion characteristics and histopathological findings was higher than any other previous approach of ADC computation.
Evgenios N. Kornaropoulos, Evangelia I. Zacharaki, Pierre Zerbib, Chieh Lin, Alain Rahmouni, Nikos Paragios
IEEE J. Biomed. Health Informatics2
2022 Broad-to-Narrow Registration and Identification of 3D Objects in Partially Scanned and Cluttered Point Clouds
abstract
The new generation 3D scanner devices have revolutionized the way information from 3D objects is acquired, making the process of scene capturing and digitization straightforward. However, the effectiveness and robustness of conventional algorithms for real scene analysis are usually deteriorated due to challenging conditions, such as noise, low resolution, and bad perceptual quality. In this work, we present a methodology for identifying and registering partially-scanned and noisy 3D objects, lying in arbitrary positions in a 3D scene, with corresponding high-quality models. The methodology is assessed on point cloud scenes with multiple objects with large missing parts. The proposed approach does not require connectivity information and is thus generic and computationally efficient, thereby facilitating computationally demanding applications, like augmented reality. The main contributions of this work are the introduction of a layered joint registration and indexing scheme of cluttered partial point clouds using a novel multi-scale saliency extraction technique to identify distinctive regions, and an enhanced similarity criterion for object-to-model matching. The processing time of the process is also accelerated through 3D scene segmentation. Comparisons of the proposed methodology with other state-of-the-art approaches highlight its superiority under challenging conditions.
Gerasimos Arvanitis, Evangelia I. Zacharaki, Libor Vása, Konstantinos Moustakas
IEEE Trans. Multim.2
2021 SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties
Andrea Raffo, Ulderico Fugacci, Silvia Biasotti, Walter Rocchia, Yonghuai Liu, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Evangelia I. Zacharaki, Eleftheria Psatha, Dimitrios Laskos, Gerasimos Arvanitis, Konstantinos Moustakas, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Daisuke Kihara, Andrea Giachetti 0001, Huu-Nghia Nguyen, Tuan-Duy Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le-Thanh, Hai-Dang Nguyen, Minh-Triet Tran
Comput. Graph.9
2021 Deep Multi-Instance Learning Using Multi-Modal Data for Diagnosis of Lymphocytosis
abstract
We investigate the use of recent advances in deep learning and propose an end-to-end trainable multi-instance convolutional neural network within a mixture-of-experts formulation that combines information from two types of data-images and clinical attributes-for the diagnosis of lymphocytosis. The convolutional network learns to extract meaningful features from images of blood cells using an embedding level approach and aggregates them. Moreover, the mixture-of-experts model combines information from these images as well as clinical attributes to form an end-to-end trainable pipeline for diagnosis of lymphocytosis. Our results demonstrate that even the convolutional network by itself is able to discover meaningful associations between the images and the diagnosis, indicating the presence of important unexploited information in the images. The mixture-of-experts formulation is shown to be more robust while maintaining performance via. a repeatability study to assess the effect of variability in data acquisition on the predictions. The proposed methods are compared with different methods from literature based both on conventional handcrafted features and machine learning, and on recent deep learning models based on attention mechanisms. Our method reports a balanced accuracy of [Formula: see text] and outperfroms the handcrafted feature-based and attention-based approaches as well that of biologists which scored [Formula: see text], [Formula: see text] and [Formula: see text] respectively. These results give insights on the potentials of the applicability of the proposed method in clinical practice. Our code and datasets can be found at https://github.com/msahasrabudhe/lymphoMIL.
Mihir Sahasrabudhe, Pierre Sujobert, Evangelia I. Zacharaki, Eugénie Maurin, Béatrice Grange, Laurent Jallades, Nikos Paragios, Maria Vakalopoulou
IEEE J. Biomed. Health Informatics3
2020 Neural network based prediction of knee contact forces for different gait speeds
abstract
Utilizing artificial intelligence (AI) for prediction of knee joint loading in lieu of computationally expensive musculoskeletal modeling is deemed necessary for real time assessment of pathological gait. In the current study, supervised learning was used to build a feed forward artificial neural network (FFANN) to learn the mapping from kinematics to joint force space. Joint angles and knee contact forces (KCFs) were estimated through inverse dynamics during treadmill walking at speeds ranging from 3 to 7 km/h. As a training set, 1848 trials of measured ground reaction forces along with calculated joint angles and KCFs were used from 40 participants. The network's predictive power was tested under different exposure levels to the full training set. Results indicate the increasing predictive power of the FFANN with increasing level of exposure to subject-specific data. Highest level of accuracy were found for medial KCF in the distal-proximal direction for all testing scenarios, with the highest Pearson coefficient R(mean across scenarios, R = 0.99) and lowest normalized root mean square error (mean across scenarios, NRMSE = 1.39%) when the model was trained using samples from all subjects. The predictive capability of the network was substantially reduced when all trials from the testing subject were excluded from the training set, although high predictive power (R = 0.87, NRMSE = 8.31%) for medial proximal-distal KCF was still observed. Findings suggest that surrogate biomechanical models produced by machine learning can predict KCFs with adequate accuracy levels, paving the way for real time analysis of gait and its consequent exploitation in clinical applications.
Georgios Giarmatzis, Evangelia I. Zacharaki, Konstantinos Moustakas
BIBM2
2020 FrailSafe: An ICT Platform for Unobtrusive Sensing of Multi-Domain Frailty for Personalized Interventions
abstract
The implications of frailty in older adults' health status and autonomy necessitates the understanding and effective management of this widespread condition as a priority for modern societies. Despite its importance, we still stand far from early detection, effective management and prevention of frailty. One of the most important reasons for this is the lack of sensitive instruments able to early identify frailty and pre-frailty conditions. The FrailSafe system provides a novel approach to this complex, medical, social and public health problem. It aspires to identify the most important components of frailty, construct cumulative metrics serving as biomarkers, and apply this knowledge and expertise for self-management and prevention. This paper presents a high-level overview of the FrailSafe system architecture providing details on the monitoring sensors and devices, the software front-ends for the interaction of the users with the system, as well as the back-end part including the data analysis and decision support modules. Data storage, remote processing and security issues are also discussed. The evaluation of the system by older individuals from 3 different countries highlighted the potential of frailty prediction strategies based on information and communication technology (ICT).
Evangelia I. Zacharaki, Konstantinos Deltouzos, Spyridon Kalogiannis, Ilias Kalamaras, Luca Bianconi, Cristiana Degano, Roberto Orselli, Javier Montesa, Konstantinos Moustakas, Konstantinos Votis, Dimitrios Tzovaras, Vasileios Megalooikonomou
IEEE J. Biomed. Health Informatics1
2019 Recognition of Breathing Activity and Medication Adherence using LSTM Neural Networks
abstract
Obstructive inflammatory pulmonary diseases are life-long conditions of the airways affecting millions worldwide. A crucial step towards effective self-management is the adherence of the patients to their medication. Accurate detection of pressurised metered dose inhaler audio events can significantly improve medication adherence facilitating more meaningful interventions by medical personnel. Towards this direction, this work presents a data-driven approach for monitoring pressurised metered dose inhaler medication adherence employing recurrent neural networks with long short term memory (LSTM) units with spectrogram features. Evaluation studies took place with intra-subject and inter-subject settings, demonstrating that our LSTM-based approach yields higher accuracy compared to classical machine learning methods reaching a prediction accuracy ranging from 92% to 94% taking into account also samples comprised of a mixture of patterns belonging to more than one of the predefined classes.
Dionysis Pettas, Stavros Nousias, Evangelia I. Zacharaki, Konstantinos Moustakas
BIBE3
2019 Hierarchical Image Inpainting by a Deep Context Encoder Exploiting Structural Similarity and Saliency Criteria
Nikolaos Stagakis, Evangelia I. Zacharaki, Konstantinos Moustakas
ICVS2
2019 Improving CNN-based activity recognition by data augmentation and transfer learning
abstract
Activity classification is a challenging problem due to large signal dimensionality, high intra-and inter-subject variability in activity patterns, presence of transitional classes showing mixture of patterns, and dominance of the null class. Supervised learning has been the prevalent choice with deep neural networks (DNNs) showing some promising potential. Deep learning however requires a large number of labeled samples which is difficult to acquire, especially from vulnerable older people. In this paper we implement 3 different convolutional neural network architectures trained on data from older people, incorporating Bayesian optimization for efficient hyperparameter tuning. We exploit various augmentation methods for time-series to make invariant predictions and also cross-utilize knowledge about physical activity of younger persons in order to improve generalization in our models designed for older adults.
Gerasimos Kalouris, Evangelia I. Zacharaki, Vasileios Megalooikonomou
INDIN2
2018 Meeting challenges of activity recognition for ageing population in real life settings
abstract
As the global community becomes more interested in improving the quality of life of older people and preventing undesired events related to their health status, the development of sophisticated devices and analysis algorithms for monitoring everyday activities is necessary more than ever. Wearable devices lie among the most popular solutions from a hardware point of view, while machine learning techniques have shown to be very powerful in behavioral monitoring. Nevertheless, creating robust models from data collected unobtrusively in home environments can be challenging, especially for the vulnerable ageing population. Under that premise, we propose an activity recognition scheme for older people along with heuristic computational solutions to address the challenges due to inconsistent measurements in non-standardized environments.
Aimilia Papagiannaki, Evangelia I. Zacharaki, Konstantinos Deltouzos, Roberto Orselli, Anne Freminet, Sibora Cela, Elena Aristodemou, Marina Polycarpou, Marina Kotsani, Athanase Benetos, John Ellul, Vasileios Megalooikonomou
HealthCom2
2018 Geriatric group analysis by clustering non-linearly embedded multi-sensor data
abstract
The goal of this study is to extract new indicators that are descriptive of aging-associated decline in reserve and function (frailty) and perform this through an unobtrusive monitoring system aiming to augment the standard geriatric assessment. Extraction of such indicators was performed by fusing information from multiple devices, such as inertial measurement units (IMUs), a games platform and an outdoor monitoring system, and thereby creating a multi-parametric profile of the older person. Principal component analysis (PCA) was applied to remove correlations in the extracted features, followed by locally linear embedding (LLE) to embed the data in a lower dimensional space where unsupervised clustering is feasible. Exploration of the identified clusters revealed patterns of frailty manifestation that were in high accordance with geriatric indices from several domains (medical, cognitive, psychological, etc). Our results highlight the potential of the applied data mining methodology for the extraction of novel frailty indicators.
Spyridon Kalogiannis, Evangelia I. Zacharaki, Konstantinos Deltouzos, Marina Kotsani, John Ellul, Athanase Benetos, Vasileios Megalooikonomou
INISTA2
2018 AtlasNet: Multi-atlas Non-linear Deep Networks for Medical Image Segmentation
Maria Vakalopoulou, Guillaume Chassagnon, Norbert Bus, Rafael Marini, Evangelia I. Zacharaki, Marie-Pierre Revel, Nikos Paragios
MICCAI (4)5
2017 A Discrete MRF Framework for Integrated Multi-Atlas Registration and Segmentation
Stavros Alchatzidis, Aristeidis Sotiras, Evangelia I. Zacharaki, Nikos Paragios
Int. J. Comput. Vis.3
2016 Deformable group-wise registration using a physiological model: Application to diffusion-weighted MRI
abstract
Intensity variations can often be described by a physiological or temporal model applied on a voxel-wise basis across a group of images. However the voxel correspondence might be unknown, imposing the need for a group-wise deformable registration coupled with the computation of the model parameters. In this paper we propose a group-wise registration method of medical images that incorporates the temporal dimension (reflecting the change of signal amplitude) of the acquisition process. Consistency on the spatiotemporal physiological model, as well as deformation smoothness, is imposed in order to produce anatomically meaningful representations of the 3D images. The performance of the proposed method is compared to two different group-wise registration approaches; one that penalizes the absolute differences in the intensities and one that penalizes the intensity range among the images on corresponding regions. We chose as an application paradigm the registration of diffusion-weighted magnetic resonance (DW-MR) images for the evaluation of patients with lymphomas. A dataset consisting of 25 patients, each scanned with 3 “b values”, was used to evaluate the method's accuracy. The proposed registration method outperfomed the other two registration approaches, making it a very promising method for highlighting the importance of DWI as an imaging biomarker.
Evgenios N. Kornaropoulos, Evangelia I. Zacharaki, Pierre Zerbib, Chieh Lin, Alain Rahmouni, Nikos Paragios
ICIP2
2016 Improving classification of epileptic and non-epileptic EEG events by feature selection
Evangelia Pippa, Evangelia I. Zacharaki, Iosif Mporas, Vasiliki Tsirka, Mark P. Richardson, Michalis Koutroumanidis, Vasileios Megalooikonomou
Neurocomputing2
2016 (Hyper)-graphical models in biomedical image analysis
Nikos Paragios, Enzo Ferrante, Ben Glocker, Nikos Komodakis, Sarah Parisot, Evangelia I. Zacharaki
Medical Image Anal.6
2015 Classification of epileptic and non-epileptic events using tensor decomposition
abstract
Misdiagnosis of epilepsy, even by experienced clinicians, can cause exposure of patients to medical procedures and treatments with potential complications. Moreover, diagnostic delays (for 7 to 10 years on average) impose economic burden at individual and population levels. In this paper, a seizure classification framework of epileptic and non-epileptic events from multi-channel EEG data is proposed. In contrast to relevant studies found in the literature, in this study, the non-epileptic class consists of two types of paroxysmal episodes of loss of consciousness, namely the psychogenic non-epileptic seizure (PNES) and the vasovagal syncope (VVS). EEG signals are represented in the spectral-spatial-temporal domain. A tensor-based approach is employed to extract signature features to feed the classification models. TUCKER decomposition is applied to learn the essence of original, high-dimensional domain of feature space and extract a multilinear discriminative subspace. The classification models were evaluated on EEG epochs from 11 subjects in an inter-subject cross-validation setting and achieved an accuracy of 96%.
Vasileios G. Kanas, Evangelia I. Zacharaki, Evangelia Pippa, Vasiliki Tsirka, Michalis Koutroumanidis, Vasileios Megalooikonomou
BIBE2
2015 Seizure detection using EEG and ECG signals for computer-based monitoring, analysis and management of epileptic patients
Iosif Mporas, Vasiliki Tsirka, Evangelia I. Zacharaki, Michalis Koutroumanidis, Mark P. Richardson, Vasileios Megalooikonomou
Expert Syst. Appl.3
2014 Individualized statistical learning from medical image databases: Application to identification of brain lesions
Güray Erus, Evangelia I. Zacharaki, Christos Davatzikos
Medical Image Anal.2
2013 Sleep Spindle Detection in EEG Signals Combining HMMs and SVMs
Iosif Mporas, Panagiotis Korvesis, Evangelia I. Zacharaki, Vasileios Megalooikonomou
EANN (2)3
2012 Combining gene expression and function in a spatially localized approach
abstract
The integration of gene expression datasets with gene function information provides valuable insights in unraveling the molecular mechanisms of the brain. In this paper, gene expression maps, acquired by the technique of voxelation, are analyzed using an atlas-based framework and the extracted spatial information is employed to organize genes in significant clusters. Gene function enrichment analysis of clusters enabled exploration of the relationships among brain regions, gene expression and gene function. In addition, the analysis revealed new function categories, for example biological process for the gene Pbx3, cellular component and biological process for the gene Ppplrlb. Our work confirms the hypothesis that genes of similar spatial expression patterns display similar functions indicating that our methodology could assist in the function identification of unannotated genes.
Evangelia I. Zacharaki, Angeliki Skoura, Desmond J. Smith, Scott Faro, Vasileios Megalooikonomou
BIBM1
2012 Abnormality Segmentation in Brain Images Via Distributed Estimation
abstract
The aim of this paper is to introduce a novel semisupervised scheme for abnormality detection and segmentation in medical images. Semisupervised learning does not require pathology modeling and, thus, allows high degree of automation. In abnormality detection, a vector is characterized as anomalous if it does not comply with the probability distribution obtained from normal data. The estimation of the probability density function, however, is usually not feasible due to large data dimensionality. In order to overcome this challenge, we treat every image as a network of locally coherent image partitions (overlapping blocks). We formulate and maximize a strictly concave likelihood function estimating abnormality for each partition and fuse the local estimates into a globally optimal estimate that satisfies the consistency constraints, based on a distributed estimation algorithm. The likelihood function consists of a model and a data term and is formulated as a quadratic programming problem. The method is applied for automatically segmenting brain pathologies, such as simulated brain infarction and dysplasia, as well as real lesions in diabetes patients. The assessment of the method using receiver operating characteristic analysis demonstrates improvement in image segmentation over two-group analysis performed with Statistical Parametric Mapping (SPM).
Evangelia I. Zacharaki, Anastasios Bezerianos
IEEE Trans. Inf. Technol. Biomed.1
2008 Measuring Brain Lesion Progression with a Supervised Tissue Classification System
Evangelia I. Zacharaki, Stathis Kanterakis, R. Nick Bryan, Christos Davatzikos
MICCAI (1)1
2008 ORBIT: A Multiresolution Framework for Deformable Registration of Brain Tumor Images
abstract
A deformable registration method is proposed for registering a normal brain atlas with images of brain tumor patients. The registration is facilitated by first simulating the tumor mass effect in the normal atlas in order to create an atlas image that is as similar as possible to the patient's image. An optimization framework is used to optimize the location of tumor seed as well as other parameters of the tumor growth model, based on the pattern of deformation around the tumor region. In particular, the optimization is implemented in a multiresolution and hierarchical scheme, and it is accelerated by using a principal component analysis (PCA)-based model of tumor growth and mass effect, trained on a computationally more expensive biomechanical model. Validation on simulated and real images shows that the proposed registration framework, referred to as ORBIT (optimization of tumor parameters and registration of brain images with tumors), outperforms other available registration methods particularly for the regions close to the tumor, and it has the potential to assist in constructing statistical atlases from tumor-diseased brain images.
Evangelia I. Zacharaki, Dinggang Shen, Seung-Koo Lee, Christos Davatzikos
IEEE Trans. Medical Imaging1
2006 Deformable registration of brain tumor images via a statistical model of tumor-induced deformation
Ashraf Mohamed, Evangelia I. Zacharaki, Dinggang Shen, Christos Davatzikos
Medical Image Anal.2
2002 In silico radiation oncology: combining novel simulation algorithms with current visualization techniques
abstract
The concept of in silica radiation oncology is clarified in this paper. A brief literature review points out the principal domains in which experimental, mathematical, and three-dimensional (3-D) computer simulation models of tumor growth and response to radiation therapy have been developed. Two paradigms of 3-D simulation models developed by our research group are concisely presented. The first one refers to the in vitro development and radiation response of a tumor spheroid whereas the second one refers to the fractionated radiation response of a clinical tumor in vivo based on the patient's imaging data. In each case, a description of the salient points of the corresponding algorithms and the visualization techniques used takes place. Specific applications of the models to experimental and clinical cases are described and the behavior of the models is two- and three-dimensionally visualized by using virtual reality techniques. Good qualitative agreement with experimental and clinical observations strengthens the applicability of the models to real situations. A protocol for further testing and adaptation is outlined. Therefore, an advanced integrated patient specific decision support and spatio-temporal treatment planning system is expected to emerge after the completion of the necessary experimental tests and clinical evaluation.
Georgios S. Stamatakos, Dimitra D. Dionysiou, Evangelia I. Zacharaki, Nicolaos A. Mouravliansky, Konstantina S. Nikita, Nikolaos K. Uzunoglu
Proc. IEEE3
2001 Modeling tumor growth and irradiation response in vitro-a combination of high-performance computing and Web-based technologies including VRML visualization
abstract
A simplified three-dimensional Monte Carlo simulation model of in vitro tumor growth and response to fractionated radiotherapeutic schemes is presented in this paper. The paper aims at both the optimization of radiotherapy and the provision of insight into the biological mechanisms involved in tumor development. The basics of the modeling philosophy of Duechting have been adopted and substantially extended. The main processes taken into account by the model are the transitions between the cell cycle phases, the diffusion of oxygen and glucose, and the cell survival probabilities following irradiation. Specific algorithms satisfactorily describing tumor expansion and shrinkage have been applied, whereas a novel approach to the modeling of the tumor response to irradiation has been proposed and implemented. High-performance computing systems in conjunction with Web technologies have coped with the particularly high computer memory and processing demands. A visualization system based on the MATLAB software package and the virtual-reality modeling language has been employed. Its utilization has led to a spectacular representation of both the external surface and the internal structure of the developing tumor. The simulation model has been applied to the special case of small cell lung carcinoma in vitro irradiated according to both the standard and accelerated fractionation schemes. A good qualitative agreement with laboratory experience has been observed in all cases. Accordingly, the hypothesis that advanced simulation models for the in silico testing of tumor irradiation schemes could substantially enhance the radiotherapy optimization process is further strengthened. Currently, our group is investigating extensions of the presented algorithms so that efficient descriptions of the corresponding clinical (in vivo) cases are achieved.
Georgios S. Stamatakos, Evangelia I. Zacharaki, Mersini Makropoulou, Nicolaos A. Mouravliansky, Andy Marsh, Konstantina S. Nikita, Nikolaos K. Uzunoglu
IEEE Trans. Inf. Technol. Biomed.2