Mobarakol Islam

dblp:48/10644 · DBLP profile ↗
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32ranked-venue papers
5as first author
28since 2021 · last 2025
0000-0002-7162-2822ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 25 · 4 first-author · 22 since 2021Graphics, computer vision, multimedia, augmented reality and games · 17 · 2 first-author · 15 since 2021Artificial intelligence and machine learning · 6 · 1 first-author · 5 since 2021Systems, architecture and hardware · 6 · 1 first-author · 5 since 2021Human-computer interaction and ubiquitous computing · 1 · 1 first-author
YearPublicationVenuePosition
2025 Rethinking data imbalance in class incremental surgical instrument segmentation
abstract
In surgical instrument segmentation, the increasing variety of instruments over time poses a significant challenge for existing neural networks, as they are unable to effectively learn such incremental tasks and suffer from catastrophic forgetting. When learning new data, the model experiences a sharp performance drop on previously learned data. Although several continual learning methods have been proposed for incremental understanding tasks in surgical scenarios, the issue of data imbalance often leads to a strong bias in the segmentation head, resulting in poor performance. Data imbalance can occur in two forms: (i) class imbalance between new and old data, and (ii) class imbalance within the same time point of data. Such imbalances often cause the dominant classes to take over the training process of continual semantic segmentation (CSS). To address this issue, we propose SurgCSS, a novel plug-and-play CSS framework for surgical instrument segmentation under data imbalance. Specifically, we generate realistic surgical backgrounds through inpainting and blend instrument foregrounds with the generated backgrounds in a class-aware manner to balance the data distribution in various scenarios. We further propose the Class Desensitization Loss by employing contrastive learning to correct edge biases caused by data imbalance. Moreover, we dynamically fuse the weight parameters of the old and new models to achieve a better trade-off between the biased and unbiased model weights. To investigate the data imbalance problem in surgical scenarios, we construct a new benchmark for surgical instrument CSS by integrating four public datasets: EndoVis 2017, EndoVis 2018, CholecSeg8k, and SAR-RAPR50. Extensive experiments demonstrate the effectiveness of the proposed framework, achieving significant performance improvement against existing baselines. Our method demonstrates excellent potential for clinical applications. The code is publicly available at github.com/Zzsf11/SurgCSS.
Shifang Zhao, Long Bai 0008, Kun Yuan 0004, Feng Li 0034, Jieming Yu, Wenzhen Dong, Guankun Wang, Mobarakol Islam, Nicolas Padoy, Nassir Navab, Hongliang Ren 0001
Medical Image Anal.8
2025 LMT++: Adaptively Collaborating LLMs With Multi-Specialized Teachers for Continual VQA in Robotic Surgical Videos
abstract
Visual question answering (VQA) plays a vital role in advancing surgical education. However, due to the privacy concern of patient data, training VQA model with previously used data becomes restricted, making it necessary to use the exemplar-free continual learning (CL) approach. Previous CL studies in the surgical field neglected two critical issues: i) significant domain shifts caused by the wide range of surgical procedures collected from various sources, and ii) the data imbalance problem caused by the unequal occurrence of medical instruments or surgical procedures. This paper addresses these challenges with a multimodal large language model (LLM) and an adaptive weight assignment strategy. First, we developed a novel LLM-assisted multi-teacher CL framework (named LMT++), which could harness the strength of a multimodal LLM as a supplementary teacher. The LLM's strong generalization ability, as well as its good understanding of the surgical domain, help to address the knowledge gap arising from domain shifts and data imbalances. To incorporate the LLM in our CL framework, we further proposed an innovative approach to process the training data, which involves the conversion of complex LLM embeddings into logits value used within our CL training framework. Moreover, we design an adaptive weight assignment approach that balances the generalization ability of the LLM and the domain expertise of conventional VQA models obtained in previous model training processes within the CL framework. Finally, we created a new surgical VQA dataset for model evaluation. Comprehensive experimental findings on these datasets show that our approach surpasses state-of-the-art CL methods.
Yuyang Du 0001, Kexin Chen 0003, Yue Zhan, Chang Han Low, Mobarakol Islam, Yueming Jin, Guangyong Chen, Pheng-Ann Heng
IEEE Trans. Medical Imaging5
2024 LLM-Assisted Multi-Teacher Continual Learning for Visual Question Answering in Robotic Surgery
abstract
Visual question answering (VQA) can be fundamentally crucial for promoting robotic-assisted surgical education. In practice, the needs of trainees are constantly evolving, such as learning more surgical types and adapting to new surgical instruments/techniques. Therefore, continually updating the VQA system by a sequential data stream from multiple resources is demanded in robotic surgery to address new tasks. In surgical scenarios, the privacy issue of patient data often restricts the availability of old data when updating the model, necessitating an exemplar-free continual learning (CL) setup. However, prior studies overlooked two vital problems of the surgical domain: i) large domain shifts from diverse surgical operations collected from multiple departments or clinical centers, and ii) severe data imbalance arising from the uneven presence of surgical instruments or activities during surgical procedures. This paper proposes to address these two problems with a multimodal large language model (LLM) and an adaptive weight assignment methodology. We first develop a new multi-teacher CL framework that leverages a multimodal LLM as the additional teacher. The strong generalization ability of the LLM can bridge the knowledge gap when domain shifts and data imbalances occur. We then put forth a novel data processing method that transforms complex LLM embeddings into logits compatible with our CL framework. We also design an adaptive weight assignment approach that balances the generalization ability of the LLM and the domain expertise of the old CL model. Finally, we construct a new dataset for surgical VQA tasks. Extensive experimental results demonstrate the superiority of our method to other advanced CL models.
Kexin Chen 0003, Yuyang Du 0001, Tao You, Mobarakol Islam, Yueming Jin, Guangyong Chen, Pheng-Ann Heng
ICRA4
2024 OSSAR: Towards Open-Set Surgical Activity Recognition in Robot-assisted Surgery
abstract
In the realm of automated robotic surgery and computer-assisted interventions, understanding robotic surgical activities stands paramount. Existing algorithms dedicated to surgical activity recognition predominantly cater to pre-defined closed-set paradigms, ignoring the challenges of real-world open-set scenarios. Such algorithms often falter in the presence of test samples originating from classes unseen during training phases. To tackle this problem, we introduce an innovative Open-Set Surgical Activity Recognition (OSSAR) framework. Our solution leverages the hyperspherical reciprocal point strategy to enhance the distinction between known and unknown classes in the feature space. Additionally, we address the issue of over-confidence in the closed set by refining model calibration, avoiding misclassification of unknown classes as known ones. To support our assertions, we establish an open-set surgical activity benchmark utilizing the public JIGSAWS dataset. Besides, we also collect a novel dataset on endoscopic submucosal dissection for surgical activity tasks. Extensive comparisons and ablation experiments on these datasets demonstrate the significant outperformance of our method over existing state-of-the-art approaches. Our proposed solution can effectively address the challenges of real-world surgical scenarios. Our code is publicly accessible at github.com/longbai1006/OSSAR.
Long Bai 0008, Guankun Wang, Jie Wang 0097, Xiaoxiao Yang, Huxin Gao, An Wang 0007, Mobarakol Islam, Hongliang Ren 0001
ICRA8
2024 EndoUIC: Promptable Diffusion Transformer for Unified Illumination Correction in Capsule Endoscopy
Long Bai 0008, Tong Chen 0011, Qiaozhi Tan, Wan Jun Nah, Yanheng Li 0002, Zhicheng He 0010, Sishen Yuan, Zhen Chen 0018, Jinlin Wu, Mobarakol Islam, Zhen Li 0026, Hongbin Liu 0001, Hongliang Ren 0001
MICCAI (7)10
2024 EndoDAC: Efficient Adapting Foundation Model for Self-Supervised Depth Estimation from Any Endoscopic Camera
Beilei Cui, Mobarakol Islam, Long Bai 0008, An Wang 0007, Hongliang Ren 0001
MICCAI (6)2
2024 PitVQA: Image-Grounded Text Embedding LLM for Visual Question Answering in Pituitary Surgery
Runlong He, Mengya Xu, Adrito Das, Danyal Z. Khan, Sophia Bano, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
MICCAI (6)9
2024 Endo-4DGS: Endoscopic Monocular Scene Reconstruction with 4D Gaussian Splatting
Yiming Huang 0007, Beilei Cui, Long Bai 0008, Mengya Xu, Mobarakol Islam, Hongliang Ren 0001
MICCAI (6)6
2024 SimCol3D - 3D reconstruction during colonoscopy challenge
abstract
Colorectal cancer is one of the most common cancers in the world. While colonoscopy is an effective screening technique, navigating an endoscope through the colon to detect polyps is challenging. A 3D map of the observed surfaces could enhance the identification of unscreened colon tissue and serve as a training platform. However, reconstructing the colon from video footage remains difficult. Learning-based approaches hold promise as robust alternatives, but necessitate extensive datasets. Establishing a benchmark dataset, the 2022 EndoVis sub-challenge SimCol3D aimed to facilitate data-driven depth and pose prediction during colonoscopy. The challenge was hosted as part of MICCAI 2022 in Singapore. Six teams from around the world and representatives from academia and industry participated in the three sub-challenges: synthetic depth prediction, synthetic pose prediction, and real pose prediction. This paper describes the challenge, the submitted methods, and their results. We show that depth prediction from synthetic colonoscopy images is robustly solvable, while pose estimation remains an open research question.
Anita Rau, Sophia Bano, Yueming Jin, Pablo Azagra, Javier Morlana, Rawen Kader, Edward Sanderson, Bogdan J. Matuszewski, Erez Posner, Netanel Frank, Varshini Elangovan, Sista Raviteja, Zhengwen Li, Jiquan Liu, Seenivasan Lalithkumar, Mobarakol Islam, Hongliang Ren 0001, Laurence B. Lovat, J. M. M. Montiel, Danail Stoyanov
Medical Image Anal.18
2024 Curriculum-Based Augmented Fourier Domain Adaptation for Robust Medical Image Segmentation
abstract
Accurate and robust medical image segmentation is fundamental and crucial for enhancing the autonomy of computer-aided diagnosis and intervention systems. Medical data collection normally involves different scanners, protocols, and populations, making domain adaptation (DA) a highly demanding research field to alleviate model degradation in the deployment site. To preserve the model performance across multiple testing domains, this work proposes the Curriculum-based Augmented Fourier Domain Adaptation (Curri-AFDA) for robust medical image segmentation. In particular, our curriculum learning strategy is based on the causal relationship of a model under different levels of data shift in the deployment phase, where the higher the shift is, the harder to recognize the variance. Considering this, we progressively introduce more amplitude information from the target domain to the source domain in the frequency space during the curriculum-style training to smoothly schedule the semantic knowledge transfer in an easier-to-harder manner. Besides, we incorporate the training-time chained augmentation mixing to help expand the data distributions while preserving the domain-invariant semantics, which is beneficial for the acquired model to be more robust and generalize better to unseen domains. Extensive experiments on two segmentation tasks of Retina and Nuclei collected from multiple sites and scanners suggest that our proposed method yields superior adaptation and generalization performance. Meanwhile, our approach proves to be more robust under various corruption types and increasing severity levels. In addition, we show our method is also beneficial in the domain-adaptive classification task with skin lesion datasets. The code is available at https://github.com/lofrienger/Curri-AFDA.Note to Practitioners—Medical image segmentation is key to improving computer-assisted diagnosis and intervention autonomy. However, due to domain gaps between different medical sites, deep learning-based segmentation models frequently encounter performance degradation when deployed in a novel domain. Moreover, model robustness is also highly expected to mitigate the effects of data corruption. Considering all these demanding yet practical needs to automate medical applications and benefit healthcare, we propose the Curriculum-based Fourier Domain Adaptation (Curri-AFDA) for medical image segmentation. Extensive experiments on two segmentation tasks with cross-domain datasets show the consistent superiority of our method regarding adaptation and generalization on multiple testing domains and robustness against synthetic corrupted data. Besides, our approach is independent of image modalities because its efficacy does not rely on modality-specific characteristics. In addition, we demonstrate the benefit of our method for image classification besides segmentation in the ablation study. Therefore, our method can potentially be applied in many medical applications and yield improved performance. Future works may be extended by exploring the integration of curriculum learning regime with Fourier domain amplitude fusion in the testing time rather than in the training time like this work and most other existing domain adaptation works.
An Wang 0007, Mobarakol Islam, Mengya Xu, Hongliang Ren 0001
IEEE Trans Autom. Sci. Eng.2
2024 Confidence-Aware Paced-Curriculum Learning by Label Smoothing for Surgical Scene Understanding
abstract
Curriculum learning and self-paced learning are the training strategies that gradually feed the samples from easy to more complex. They have captivated increasing attention due to their excellent performance in robotic vision. Most recent works focus on designing curricula based on difficulty levels in input samples or smoothing the feature maps. However, smoothing labels to control the learning utility in a curriculum manner is still unexplored. In this work, we design a paced curriculum by label smoothing (P-CBLS) using paced learning with uniform label smoothing (ULS) for classification tasks and fuse uniform and spatially varying label smoothing (SVLS) for semantic segmentation tasks in a curriculum manner. In ULS and SVLS, a bigger smoothing factor value enforces a heavy smoothing penalty in the true label and limits learning less information. Therefore, we design the curriculum by label smoothing (CBLS). We set a bigger smoothing value at the beginning of training and gradually decreased it to zero to control the model learning utility from lower to higher. We also designed a confidence-aware pacing function and combined it with our CBLS to investigate the benefits of various curricula. The proposed techniques are validated on four robotic surgery datasets of multi-class, multi-label classification, captioning, and segmentation tasks. We also investigate the robustness of our method by corrupting validation data into different severity levels. Our extensive analysis shows that the proposed method improves prediction accuracy and robustness. The code is publicly available at https://github.com/XuMengyaAmy/P-CBLS.Note to Practitioners—The motivation of this article is to improve the performance and robustness of deep neural networks in safety-critical applications such as robotic surgery by controlling the learning ability of the model in a curriculum learning manner and allowing the model to imitate the cognitive process of humans and animals. The designed approaches do not add parameters that require additional computational resources.
Mengya Xu, Mobarakol Islam, Ben Glocker, Hongliang Ren 0001
IEEE Trans Autom. Sci. Eng.2
2024 Privacy-Preserving Synthetic Continual Semantic Segmentation for Robotic Surgery
abstract
Deep Neural Networks (DNNs) based semantic segmentation of the robotic instruments and tissues can enhance the precision of surgical activities in robot-assisted surgery. However, in biological learning, DNNs cannot learn incremental tasks over time and exhibit catastrophic forgetting, which refers to the sharp decline in performance on previously learned tasks after learning a new one. Specifically, when data scarcity is the issue, the model shows a rapid drop in performance on previously learned instruments after learning new data with new instruments. The problem becomes worse when it limits releasing the dataset of the old instruments for the old model due to privacy concerns and the unavailability of the data for the new or updated version of the instruments for the continual learning model. For this purpose, we develop a privacy-preserving synthetic continual semantic segmentation framework by blending and harmonizing (i) open-source old instruments foreground to the synthesized background without revealing real patient data in public and (ii) new instruments foreground to extensively augmented real background. To boost the balanced logit distillation from the old model to the continual learning model, we design overlapping class-aware temperature normalization (CAT) by controlling model learning utility. We also introduce multi-scale shifted-feature distillation (SD) to maintain long and short-range spatial relationships among the semantic objects where conventional short-range spatial features with limited information reduce the power of feature distillation. We demonstrate the effectiveness of our framework on the EndoVis 2017 and 2018 instrument segmentation dataset with a generalized continual learning setting. Code is available at https://github.com/XuMengyaAmy/Synthetic_CAT_SD.
Mengya Xu, Mobarakol Islam, Long Bai 0008, Hongliang Ren 0001
IEEE Trans. Medical Imaging2
2023 Surgical-VQLA:Transformer with Gated Vision-Language Embedding for Visual Question Localized-Answering in Robotic Surgery
abstract
Despite the availability of computer-aided simulators and recorded videos of surgical procedures, junior residents still heavily rely on experts to answer their queries. However, expert surgeons are often overloaded with clinical and academic workloads and limit their time in answering. For this purpose, we develop a surgical question-answering system to facilitate robot-assisted surgical scene and activity understanding from recorded videos. Most of the existing visual question answering (VQA) methods require an object detector and regions based feature extractor to extract visual features and fuse them with the embedded text of the question for answer generation. However, (i) surgical object detection model is scarce due to smaller datasets and lack of bounding box annotation; (ii) current fusion strategy of heterogeneous modalities like text and image is naive; (iii) the localized answering is missing, which is crucial in complex surgical scenarios. In this paper, we propose Visual Question Localized-Answering in Robotic Surgery (Surgical-VQLA) to localize the specific surgical area during the answer prediction. To deal with the fusion of the heterogeneous modalities, we design gated vision-language embedding (GVLE) to build input patches for the Language Vision Transformer (LViT) to predict the answer. To get localization, we add the detection head in parallel with the prediction head of the LViT. We also integrate generalized intersection over union (GIoU) loss to boost localization performance by preserving the accuracy of the question-answering model. We annotate two datasets of VQLA by utilizing publicly available surgical videos from EndoVis-17 and 18 of the MICCAI challenges. Our validation results suggest that Surgical-VQLA can better understand the surgical scene and localized the specific area related to the question-answering. GVLE presents an efficient language-vision embedding technique by showing superior performance over the existing benchmarks.
Long Bai 0008, Mobarakol Islam, Seenivasan Lalithkumar, Hongliang Ren 0001
ICRA2
2023 Generalizing Surgical Instruments Segmentation to Unseen Domains with One-to-Many Synthesis
abstract
Despite their impressive performance in various surgical scene understanding tasks, deep learning-based methods are frequently hindered from deploying to real-world surgical applications for various causes. Particularly, data collection, annotation, and domain shift in-between sites and patients are the most common obstacles. In this work, we mitigate data-related issues by efficiently leveraging minimal source images to generate synthetic surgical instrument segmentation datasets and achieve outstanding generalization performance on unseen real domains. Specifically, in our framework, only one background tissue image and at most three images of each foreground instrument are taken as the seed images. These source images are extensively transformed and employed to build up the foreground and background image pools, from which randomly sampled tissue and instrument images are composed with multiple blending techniques to generate new surgical scene images. Besides, we introduce hybrid training-time augmentations to diversify the training data further. Extensive evaluation on three real-world datasets, i.e., Endo2017, Endo2018, and RoboTool, demonstrates that our one-to-many synthetic surgical instruments datasets generation and segmentation framework can achieve encouraging performance compared with training with real data. Notably, on the RoboTool dataset, where a more significant domain gap exists, our framework shows its superiority of generalization by a considerable margin. We expect that our inspiring results will attract research attention to improving model generalization with data synthesizing.
An Wang 0007, Mobarakol Islam, Mengya Xu, Hongliang Ren 0001
IROS2
2023 LLCaps: Learning to Illuminate Low-Light Capsule Endoscopy with Curved Wavelet Attention and Reverse Diffusion
Long Bai 0008, Tong Chen 0011, Yanan Wu 0003, An Wang 0007, Mobarakol Islam, Hongliang Ren 0001
MICCAI (10)5
2023 Revisiting Distillation for Continual Learning on Visual Question Localized-Answering in Robotic Surgery
Long Bai 0008, Mobarakol Islam, Hongliang Ren 0001
MICCAI (9)2
2023 CAT-ViL: Co-attention Gated Vision-Language Embedding for Visual Question Localized-Answering in Robotic Surgery
Long Bai 0008, Mobarakol Islam, Hongliang Ren 0001
MICCAI (9)2
2023 SurgicalGPT: End-to-End Language-Vision GPT for Visual Question Answering in Surgery
Seenivasan Lalithkumar, Mobarakol Islam, Gokul Kannan, Hongliang Ren 0001
MICCAI (9)2
2023 S2ME: Spatial-Spectral Mutual Teaching and Ensemble Learning for Scribble-Supervised Polyp Segmentation
An Wang 0007, Mengya Xu, Yang Zhang 0053, Mobarakol Islam, Hongliang Ren 0001
MICCAI (1)4
2023 CholecTriplet2021: A benchmark challenge for surgical action triplet recognition
Chinedu Innocent Nwoye, Deepak Alapatt, Tong Yu 0009, Armine Vardazaryan, Fangfang Xia, Tong Xia, Fucang Jia, Yuxuan Yang 0007, Hao Wang 0081, Derong Yu, Guoyan Zheng, Xiaotian Duan, Neil Getty, Ricardo Sanchez-Matilla, Maria Robu, Li Zhang 0040, Huabin Chen, Jiacheng Wang 0002, Liansheng Wang 0002, Beerend G. A. Gerats, Sista Raviteja, Rachana Sathish, Rong Tao, Satoshi Kondo, Winnie Pang, Hongliang Ren 0001, Julian Ronald Abbing, Mohammad Hasan Sarhan, Sebastian Bodenstedt, Nithya Bhasker, Bruno Oliveira 0002, Helena R. Torres, Finn Gaida, Tobias Czempiel, João L. Vilaça, Pedro Morais, Jaime C. Fonseca 0001, Ruby Mae Egging, Inge Nicole Wijma, Chen Qian 0006, Guibin Bian, Zhen Li 0026, Velmurugan Balasubramanian, Debdoot Sheet, Imanol Luengo, Yuanbo Zhu, Shuai Ding 0001, Jakob-Anton Aschenbrenner, Nicolas Elini van der Kar, Mengya Xu, Mobarakol Islam, Seenivasan Lalithkumar, Alexander Jenke, Danail Stoyanov, Didier Mutter, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Nicolas Padoy
Medical Image Anal.54
2022 Estimating Model Performance Under Domain Shifts with Class-Specific Confidence Scores
Zeju Li, Konstantinos Kamnitsas, Mobarakol Islam, Chen Chen 0042, Ben Glocker
MICCAI (8)3
2022 Surgical-VQA: Visual Question Answering in Surgical Scenes Using Transformer
Seenivasan Lalithkumar, Mobarakol Islam, Adithya K. Krishna, Hongliang Ren 0001
MICCAI (8)2
2022 Rethinking Surgical Instrument Segmentation: A Background Image Can Be All You Need
An Wang 0007, Mobarakol Islam, Mengya Xu, Hongliang Ren 0001
MICCAI (8)2
2022 Rethinking Surgical Captioning: End-to-End Window-Based MLP Transformer Using Patches
Mengya Xu, Mobarakol Islam, Hongliang Ren 0001
MICCAI (8)2
2022 Angular Gap: Reducing the Uncertainty of Image Difficulty through Model Calibration
abstract
Curriculum learning needs example difficulty to proceed from easy to hard. However, the credibility of image difficulty is rarely investigated, which can seriously affect the effectiveness of curricula. In this work, we propose Angular Gap, a measure of difficulty based on the difference in angular distance between feature embeddings and class-weight embeddings built by hyperspherical learning. To ascertain difficulty estimation, we introduce class-wise model calibration, as a post-training technique, to the learnt hyperbolic space. This bridges the gap between probabilistic model calibration and angular distance estimation of hyperspherical learning. We show the superiority of our calibrated Angular Gap over recent difficulty metrics on CIFAR10-H and ImageNetV2. We further propose a curriculum based on Angular Gap for unsupervised domain adaptation that can translate from learning easy samples to mining hard samples. We combine this curriculum with a state-of-the-art self-training method, Cycle Self Training (CST). The proposed Curricular CST learns robust representations and outperforms recent baselines on Office31 and VisDA 2017.
Bohua Peng, Mobarakol Islam, Mei Tu
ACM Multimedia2
2021 Learning Domain Adaptation with Model Calibration for Surgical Report Generation in Robotic Surgery
abstract
Generating a surgical report in robot-assisted surgery, in the form of natural language expression of surgical scene understanding, can play a significant role in document entry tasks, surgical training, and post-operative analysis. Despite the state-of-the-art accuracy of the deep learning algorithm, the deployment performance often drops when applied to the Target Domain (TD) data. For this purpose, we develop a multi-layer transformer-based model with the gradient reversal adversarial learning to generate a caption for the multi-domain surgical images that can describe the semantic relationship between instruments and surgical Region of Interest (ROI). In the gradient reversal adversarial learning scheme, the gradient multiplies with a negative constant and updates adversarially in backward propagation, discriminating between the source and target domains and emerging domain-invariant features. We also investigate model calibration with label smoothing technique and the effect of a well-calibrated model for the penultimate layer’s feature representation and Domain Adaptation (DA). We annotate two robotic surgery datasets of MICCAI robotic scene segmentation and Transoral Robotic Surgery (TORS) with the captions of procedures and empirically show that our proposed method improves the performance in both source and target domain surgical reports generation in the manners of unsupervised, zero-shot, one-shot, and few-shot learning.
Mengya Xu, Mobarakol Islam, Chwee Ming Lim, Hongliang Ren 0001
ICRA2
2021 Class-Incremental Domain Adaptation with Smoothing and Calibration for Surgical Report Generation
Mengya Xu, Mobarakol Islam, Chwee Ming Lim, Hongliang Ren 0001
MICCAI (4)2
2021 ST-MTL: Spatio-Temporal multitask learning model to predict scanpath while tracking instruments in robotic surgery
Mobarakol Islam, Vibashan VS, Chwee Ming Lim, Hongliang Ren 0001
Medical Image Anal.1
2020 AP-MTL: Attention Pruned Multi-task Learning Model for Real-time Instrument Detection and Segmentation in Robot-assisted Surgery
abstract
Surgical scene understanding and multi-tasking learning are crucial for image-guided robotic surgery. Training a real-time robotic system for the detection and segmentation of high-resolution images provides a challenging problem with the limited computational resource. The perception drawn can be applied in effective real-time feedback, surgical skill assessment, and human-robot collaborative surgeries to enhance surgical outcomes. For this purpose, we develop a novel end-to-end trainable real-time Multi-Task Learning (MTL) model with weight-shared encoder and task-aware detection and segmentation decoders. Optimization of multiple tasks at the same convergence point is vital and presents a complex problem. Thus, we propose an asynchronous task-aware optimization (ATO) technique to calculate task-oriented gradients and train the decoders independently. Moreover, MTL models are always computationally expensive, which hinder real-time applications. To address this challenge, we introduce a global attention dynamic pruning (GADP) by removing less significant and sparse parameters. We further design a skip squeeze and excitation (SE) module, which suppresses weak features, excites significant features and performs dynamic spatial and channel-wise feature re-calibration. Validating on the robotic instrument segmentation dataset of MICCAI endoscopic vision challenge, our model significantly outperforms state-of-the-art segmentation and detection models, including best-performed models in the challenge.
Mobarakol Islam, Vibashan VS, Hongliang Ren 0001
ICRA1
2020 Learning and Reasoning with the Graph Structure Representation in Robotic Surgery
Mobarakol Islam, Seenivasan Lalithkumar, Chwee Ming Lim, Hongliang Ren 0001
MICCAI (3)1
2019 Learning Where to Look While Tracking Instruments in Robot-Assisted Surgery
Mobarakol Islam, Yueyuan Li, Hongliang Ren 0001
MICCAI (5)1
2001 A new weight freezing method for reducing training time in designing artificial neural networks
abstract
The paper presents a novel weight freezing (NWF) method to reduce training time in designing artificial neural networks (ANNs). The idea behind NWF is to freeze input weights of a hidden node when its output does not change much in the successive few training epochs. Theoretical and experimental studies reveal that some hidden nodes of an ANN maintain almost constant output after some training epochs, while others continuously change during the whole training period. Our preliminary results indicate the effectiveness of NWF to reduce training time in designing ANNs.
Mobarakol Islam, M. Shahjahan, Kazuyuki Murase
SMC1