Scientific deep learning (DL) at scale typically trains on terabyte-scale datasets across thousands of accelerators, placing immense pressure on storage systems to keep pace with computation. Existing solutions respond to this demand by tuning individual I/O parameters to accelerate training performance. However, these techniques are limited by costly experiments, configuration space explosion, and inability to generalize application-specific optimizations. This leads to applications running with suboptimal configurations that reduce training efficiency, system utilization, or both. To address the challenge of finding the optimal configuration efficiently, we developed GLANCED-IO, a cross-layer I/O optimization framework that optimizes DL pipelines with high-fidelity approximation and efficient configuration space exploration. Through this work, we identified the following three key findings. First, independently optimizing either the application or system configurations leaves up to 2.4 × performance on the table for scientists to efficiently run DL pipelines on HPC systems. Second, GLANCED-IO’s one-factor-at-a-time (OFAT)-guided greedy exploration strategy achieved results comparable to more-expensive autotuning techniques while removing the pre-training required by ML-based approaches. Third, GLANCED-IO avoids executing the full application during optimization by operating on representative data subsets without GPUs, yet preserves 93% performance fidelity on average when deployed in DL pipelines. We demonstrate the efficacy of GLANCED-IO by optimizing large-scale global weather forecasting DL workloads, achieving up to 1.57 × better performance than state-of-the-art with 2.3 × fewer configuration evaluations than AIIO and 3.3 × faster optimization than DeepHyper.

Modern scientific and deep learning workloads on HPC systems rely on profiling and tracing across multiple software and hardware layers, generating diagnostic traces that often reach terabyte scale. Existing approaches manage these traces along two axes: trace formats and analysis tooling. Practitioners often convert raw traces into queryable formats, but doing so nearly doubles storage when raw files are retained for compatibility and requires upfront schema discovery that profiling tools cannot guarantee. A cleaner path is to make raw traces efficient in place, but this requires overcoming three limitations: lack of selective querying, analysis throughput bottlenecks, and lack of physical clustering. To address these limitations jointly, we developed Horatio, a raw trace management framework that indexes, analyzes, and physically clusters raw traces directly. Three findings emerge from our work. First, Horatio stores a lightweight RocksDB-backed auxiliary index alongside the raw trace, including gzip checkpoints, per-chunk bloom filters, and chunk-level statistics, delivering selective queries up to 75 × faster than naive Parquet at ∼ 1.01 × raw storage, with the highest cross-query mean throughput (232 M events/s) among state-of-the-art formats. Second, offloading event-level computation to a native C++ backend while keeping Dask for orchestration yields 80–83 × speedup over the original Dask-based DFAnalyzer. Third, lossless trace clustering that preserves the same input format yields a further 1.8–5.5 × end-to-end speedup across four AI and scientific workloads, and up to 230 × on h5bench where the preset aligns tightly with the cluster boundary, all with original layouts reconstructible on demand. Across five AI and scientific workloads, Horatio completes pipelines that DFAnalyzer cannot finish within 8 hours. On a 2.2 TB uncompressed trace, Horatio’s MPI-based mode scales to 16 × at 32 nodes on the full event set and its Dask-based path peaks at 4 × on a preset-filtered workload, both completing where DFAnalyzer hits OOM at every scale.

Samuel Cahyawijaya, Holy Lovenia, Joel Ruben Antony Moniz, Tack Hwa Wong, Mohammad Rifqi Farhansyah, Thant Thiri Maung, Frederikus Hudi, David Anugraha, Muhammad Ravi Shulthan Habibi, Muhammad Reza Qorib, Amit Agarwal, Joseph Marvin Imperial, Hitesh Laxmichand Patel, Vicky Feliren, Bahrul Ilmi Nasution, Manuel Antonio Rufino, Genta Indra Winata, Rian Adam Rajagede, Carlos Rafael Catalan, Mohamed Fazli Mohamed Imam, Priyaranjan Pattnayak, Salsabila Zahirah Pranida, Kevin Pratama, Yeshil Bangera, Adisai Na-Thalang, Patricia Nicole Monderin, Yueqi Song, Christian Simon, Lynnette Hui Xian Ng, Richardy Lobo Sapan, Taki Hasan Rafi, Bin Wang, Supryadi, Kanyakorn Veerakanjana, Piyalitt Ittichaiwong, Matthew Theodore Roque, Karissa Vincentio, Takdanai Kreangphet, Phakphum Artkaew, Kadek Hendrawan Palgunadi, Yanzhi Yu, Rochana Prih Hastuti, William Nixon, Mithil Bangera, Adrian Xuan Wei Lim, Aye Hninn Khine, Hanif Muhammad Zhafran, Teddy Ferdinan, Audra Aurora Izzani, Ayushman Singh, Evan Evan, Jauza Akbar Krito, Michael Anugraha, Fenal Ashokbhai Ilasariya, Haochen Li, John Amadeo Daniswara, Filbert Aurelian Tjiaranata, Eryawan Presma Yulianrifat, Can Udomcharoenchaikit, Fadil Risdian Ansori, Mahardika Krisna Ihsani, Giang Nguyen, Anab Maulana Barik, Dan John Velasco, Rifo Ahmad Genadi, Saptarshi Saha, Chengwei Wei, Isaiah Edri W. Flores, Kenneth Chen Ko Han, Anjela Gail D. Santos, Wan Shen Lim, Kaung Si Phyo, Tim Santos, Meisyarah Dwiastuti, Jiayun Luo, Jan Christian Blaise Cruz, Ming Shan Hee, Ikhlasul Akmal Hanif, M.Alif Al Hakim, Muhammad Rizky Sya’ban, Kun Kerdthaisong, Lester James Validad Miranda, Fajri Koto, Tirana Noor Fatyanosa, Alham Fikri Aji, Jostin Jerico Rosal, Jun Kevin, Robert Wijaya, Onno P. Kampman, Ruochen Zhang, Börje F. Karlsson, Peerat Limkonchotiwat. Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2025.

Holy Lovenia, Rahmad Mahendra, Salsabil Maulana Akbar, Lester James V. Miranda, Jennifer Santoso, Elyanah Aco, Akhdan Fadhilah, Jonibek Mansurov, Joseph Marvin Imperial, Onno P. Kampman, Joel Ruben Antony Moniz, Muhammad Ravi Shulthan Habibi, Frederikus Hudi, Railey Montalan, Ryan Ignatius, Joanito Agili Lopo, William Nixon, Börje F. Karlsson, James Jaya, Ryandito Diandaru, Yuze Gao, Patrick Amadeus, Bin Wang, Jan Christian Blaise Cruz, Chenxi Whitehouse, Ivan Halim Parmonangan, Maria Khelli, Wenyu Zhang, Lucky Susanto, Reynard Adha Ryanda, Sonny Lazuardi Hermawan, Dan John Velasco, Muhammad Dehan Al Kautsar, Willy Fitra Hendria, Yasmin Moslem, Noah Flynn, Muhammad Farid Adilazuarda, Haochen Li, Johanes Lee, R. Damanhuri, Shuo Sun, Muhammad Reza Qorib, Amirbek Djanibekov, Wei Qi Leong, Quyet V. Do, Niklas Muennighoff, Tanrada Pansuwan, Ilham Firdausi Putra, Yan Xu, Tai Ngee Chia, Ayu Purwarianti, Sebastian Ruder, William Tjhi, Peerat Limkonchotiwat, Alham Fikri Aji, Sedrick Keh, Genta Indra Winata, Ruochen Zhang, Fajri Koto, Zheng-Xin Yong, Samuel Cahyawijaya. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.