Hayit Greenspan

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65ranked-venue papers
23as first author
6since 2021 · last 2025
0000-0001-6908-7552ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 31 · 13 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 31 · 8 first-author · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 24 · 6 first-author · 1 since 2021Human-computer interaction and ubiquitous computing · 1
YearPublicationVenuePosition
2025 Cross-Modal CXR-CTPA Knowledge Distillation Using Latent Diffusion Priors Towards CXR Pulmonary Embolism Diagnosis
Noa Cahan, Meshi Sizikov, Hayit Greenspan
MICCAI (15)3
2023 Supervised Domain Adaptation by transferring both the parameter set and its gradient
Shaya Goodman, Hayit Greenspan, Jacob Goldberger
Neurocomputing2
2023 The Liver Tumor Segmentation Benchmark (LiTS)
abstract
In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LiTS), which was organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 and the International Conferences on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2017 and 2018. The image dataset is diverse and contains primary and secondary tumors with varied sizes and appearances with various lesion-to-background levels (hyper-/hypo-dense), created in collaboration with seven hospitals and research institutions. Seventy-five submitted liver and liver tumor segmentation algorithms were trained on a set of 131 computed tomography (CT) volumes and were tested on 70 unseen test images acquired from different patients. We found that not a single algorithm performed best for both liver and liver tumors in the three events. The best liver segmentation algorithm achieved a Dice score of 0.963, whereas, for tumor segmentation, the best algorithms achieved Dices scores of 0.674 (ISBI 2017), 0.702 (MICCAI 2017), and 0.739 (MICCAI 2018). Retrospectively, we performed additional analysis on liver tumor detection and revealed that not all top-performing segmentation algorithms worked well for tumor detection. The best liver tumor detection method achieved a lesion-wise recall of 0.458 (ISBI 2017), 0.515 (MICCAI 2017), and 0.554 (MICCAI 2018), indicating the need for further research. LiTS remains an active benchmark and resource for research, e.g., contributing the liver-related segmentation tasks in http://medicaldecathlon.com/. In addition, both data and online evaluation are accessible via https://competitions.codalab.org/competitions/17094.
Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li 0004, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi 0001, Hao Chen 0011, Grzegorz Chlebus, Erik Dam, Qi Dou 0001, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han 0009, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul F. Jaeger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Xiaomeng Li 0001, John S. Lowengrub, Jun Ma 0016, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Xiaojuan Qi 0001, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Daguang Xu, Xiaoping Yang 0001, Simon C. H. Yu, Yading Yuan, Miao Yue, Liping Zhang 0009, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Joseph Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern Menze
Medical Image Anal.107
2022 A Self Supervised StyleGAN for Image Annotation and Classification With Extremely Limited Labels
abstract
The recent success of learning-based algorithms can be greatly attributed to the immense amount of annotated data used for training. Yet, many datasets lack annotations due to the high costs associated with labeling, resulting in degraded performances of deep learning methods. Self-supervised learning is frequently adopted to mitigate the reliance on massive labeled datasets since it exploits unlabeled data to learn relevant feature representations. In this work, we propose SS-StyleGAN, a self-supervised approach for image annotation and classification suitable for extremely small annotated datasets. This novel framework adds self-supervision to the StyleGAN architecture by integrating an encoder that learns the embedding to the StyleGAN latent space, which is well-known for its disentangled properties. The learned latent space enables the smart selection of representatives from the data to be labeled for improved classification performance. We show that the proposed method attains strong classification results using small labeled datasets of sizes 50 and even 10. We demonstrate the superiority of our approach for the tasks of COVID-19 and liver tumor pathology identification.
Dana Cohen Hochberg, Hayit Greenspan, Raja Giryes
IEEE Trans. Medical Imaging2
2021 A Review of Deep Learning in Medical Imaging: Imaging Traits, Technology Trends, Case Studies With Progress Highlights, and Future Promises
abstract
Since its renaissance, deep learning has been widely used in various medical imaging tasks and has achieved remarkable success in many medical imaging applications, thereby propelling us into the so-called artificial intelligence (AI) era. It is known that the success of AI is mostly attributed to the availability of big data with annotations for a single task and the advances in high performance computing. However, medical imaging presents unique challenges that confront deep learning approaches. In this survey paper, we first present traits of medical imaging, highlight both clinical needs and technical challenges in medical imaging, and describe how emerging trends in deep learning are addressing these issues. We cover the topics of network architecture, sparse and noisy labels, federating learning, interpretability, uncertainty quantification, etc. Then, we present several case studies that are commonly found in clinical practice, including digital pathology and chest, brain, cardiovascular, and abdominal imaging. Rather than presenting an exhaustive literature survey, we instead describe some prominent research highlights related to these case study applications. We conclude with a discussion and presentation of promising future directions.
Shaohua Kevin Zhou, Hayit Greenspan, Christos Davatzikos, James S. Duncan, Bram van Ginneken, Anant Madabhushi, Jerry L. Prince, Daniel Rueckert, Ronald M. Summers
Proc. IEEE2
2021 COVID-19 in CXR: From Detection and Severity Scoring to Patient Disease Monitoring
abstract
This work estimates the severity of pneumonia in COVID-19 patients and reports the findings of a longitudinal study of disease progression. It presents a deep learning model for simultaneous detection and localization of pneumonia in chest Xray (CXR) images, which is shown to generalize to COVID-19 pneumonia. The localization maps are utilized to calculate a "Pneumonia Ratio" which indicates disease severity. The assessment of disease severity serves to build a temporal disease extent profile for hospitalized patients. To validate the model's applicability to the patient monitoring task, we developed a validation strategy which involves a synthesis of Digital Reconstructed Radiographs (DRRs - synthetic Xray) from serial CT scans; we then compared the disease progression profiles that were generated from the DRRs to those that were generated from CT volumes.
Maayan Frid-Adar, Rula Amer, Ophir Gozes, Jannette Nassar, Hayit Greenspan
IEEE J. Biomed. Health Informatics5
2020 Nodule2vec: A 3D Deep Learning System for Pulmonary Nodule Retrieval Using Semantic Representation
Ilia Kravets, Tal Heletz, Hayit Greenspan
MICCAI (6)3
2020 A mixture of views network with applications to multi-view medical imaging
Yaniv Shachor, Hayit Greenspan, Jacob Goldberger
Neurocomputing2
2020 Position paper on COVID-19 imaging and AI: From the clinical needs and technological challenges to initial AI solutions at the lab and national level towards a new era for AI in healthcare
Hayit Greenspan, Raúl San José Estépar, Wiro J. Niessen, Eliot L. Siegel, Mads Nielsen
Medical Image Anal.1
2020 An Adversarial Learning Approach to Medical Image Synthesis for Lesion Detection
abstract
The identification of lesion within medical image data is necessary for diagnosis, treatment and prognosis. Segmentation and classification approaches are mainly based on supervised learning with well-paired image-level or voxel-level labels. However, labeling the lesion in medical images is laborious requiring highly specialized knowledge. We propose a medical image synthesis model named abnormal-to-normal translation generative adversarial network (ANT-GAN) to generate a normal-looking medical image based on its abnormal-looking counterpart without the need for paired training data. Unlike typical GANs, whose aim is to generate realistic samples with variations, our more restrictive model aims at producing a normal-looking image corresponding to one containing lesions, and thus requires a special design. Being able to provide a "normal" counterpart to a medical image can provide useful side information for medical imaging tasks like lesion segmentation or classification validated by our experiments. In the other aspect, the ANT-GAN model is also capable of producing highly realistic lesion-containing image corresponding to the healthy one, which shows the potential in data augmentation verified in our experiments.
Liyan Sun, Jiexiang Wang, Yue Huang 0001, Xinghao Ding, Hayit Greenspan, John W. Paisley
IEEE J. Biomed. Health Informatics5
2019 Automatic Segmentation of Muscle Tissue and Inter-muscular Fat in Thigh and Calf MRI Images
Rula Amer, Jannette Nassar, David Bendahan, Hayit Greenspan, Noam Ben-Eliezer
MICCAI (2)4
2019 A Sparsely Distributed Intra-cardial Ultrasonic Array for Real-Time Endocardial Mapping
Alon Baram, Hayit Greenspan, Zvi Freidman
MICCAI (5)2
2019 Endotracheal Tube Detection and Segmentation in Chest Radiographs Using Synthetic Data
Maayan Frid-Adar, Rula Amer, Hayit Greenspan
MICCAI (6)3
2019 A Soft STAPLE Algorithm Combined with Anatomical Knowledge
Eytan Kats, Jacob Goldberger, Hayit Greenspan
MICCAI (3)3
2019 Cross-modality synthesis from CT to PET using FCN and GAN networks for improved automated lesion detection
Avi Ben-Cohen, Eyal Klang, Stephen P. Raskin, Shelly Soffer, Simona Ben-Haim, Eli Konen, Michal Amitai, Hayit Greenspan
Eng. Appl. Artif. Intell.8
2018 Fully convolutional network and sparsity-based dictionary learning for liver lesion detection in CT examinations
Avi Ben-Cohen, Eyal Klang, Ariel Kerpel, Eli Konen, Michal Amitai, Hayit Greenspan
Neurocomputing6
2018 GAN-based synthetic medical image augmentation for increased CNN performance in liver lesion classification
Maayan Frid-Adar, Idit Diamant, Eyal Klang, Michal Amitai, Jacob Goldberger, Hayit Greenspan
Neurocomputing6
2017 White Matter Fiber Representation Using Continuous Dictionary Learning
Guy Alexandroni, Yana Podolsky, Hayit Greenspan, Tal Remez, Or Litany, Alexander M. Bronstein, Raja Giryes
MICCAI (1)3
2017 Multi-view longitudinal CNN for multiple sclerosis lesion segmentation
Ariel Birenbaum, Hayit Greenspan
Eng. Appl. Artif. Intell.2
2016 Improved Patch-Based Automated Liver Lesion Classification by Separate Analysis of the Interior and Boundary Regions
abstract
The bag-of-visual-words (BoVW) method with construction of a single dictionary of visual words has been used previously for a variety of classification tasks in medical imaging, including the diagnosis of liver lesions. In this paper, we describe a novel method for automated diagnosis of liver lesions in portal-phase computed tomography (CT) images that improves over single-dictionary BoVW methods by using an image patch representation of the interior and boundary regions of the lesions. Our approach captures characteristics of the lesion margin and of the lesion interior by creating two separate dictionaries for the margin and the interior regions of lesions ("dual dictionaries" of visual words). Based on these dictionaries, visual word histograms are generated for each region of interest within the lesion and its margin. For validation of our approach, we used two datasets from two different institutions, containing CT images of 194 liver lesions (61 cysts, 80 metastasis, and 53 hemangiomas). The final diagnosis of each lesion was established by radiologists. The classification accuracy for the images from the two institutions was 99% and 88%, respectively, and 93% for a combined dataset. Our new BoVW approach that uses dual dictionaries shows promising results. We believe the benefits of our approach may generalize to other application domains within radiology.
Idit Diamant, Assaf Hoogi, Christopher F. Beaulieu, Mustafa Safdari, Eyal Klang, Michal Amitai, Hayit Greenspan, Daniel L. Rubin
IEEE J. Biomed. Health Informatics7
2016 Multi-View Probabilistic Classification of Breast Microcalcifications
abstract
Classification of clustered breast microcalcifications into benign and malignant categories is an extremely challenging task for computerized algorithms and expert radiologists alike. In this paper we apply a multi-view-classifier for the task. We describe a two-step classification method that is based on a view-level decision, implemented by a logistic regression classifier, followed by a stochastic combination of the two view-level indications into a single benign or malignant decision. The proposed method was evaluated on a large number of cases from a standardized digital database for screening mammography (DDSM). Experimental results demonstrate the advantage of the proposed multi-view classification algorithm that automatically learns the best way to combine the views.
Alan Joseph Bekker, Moran Shalhon, Hayit Greenspan, Jacob Goldberger
IEEE Trans. Medical Imaging3
2016 Guest Editorial Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique
abstract
The papers in this special section focus on the technology and applications supported by deep learning. Deep learning is a growing trend in general data analysis and has been termed one of the 10 breakthrough technologies of 2013. Deep learning is an improvement of artificial neural networks, consisting of more layers that permit higher levels of abstraction and improved predictions from data. To date, it is emerging as the leading machine-learning tool in the general imaging and computer vision domains. In particular, convolutional neural networks (CNNs) have proven to be powerful tools for a broad range of computer vision tasks. Deep CNNs automatically learn mid-level and high-level abstractions obtained from raw data (e.g., images). Recent results indicate that the generic descriptors extracted from CNNs are extremely effective in object recognition and localization in natural images. Medical image analysis groups across the world are quickly entering the field and applying CNNs and other deep learning methodologies to a wide variety of applications.
Hayit Greenspan, Bram van Ginneken, Ronald M. Summers
IEEE Trans. Medical Imaging1
2011 X-ray Categorization and Spatial Localization of Chest Pathologies
Uri Avni, Hayit Greenspan, Jacob Goldberger
MICCAI (3)2
2011 X-ray Categorization and Retrieval on the Organ and Pathology Level, Using Patch-Based Visual Words
abstract
In this study we present an efficient image categorization and retrieval system applied to medical image databases, in particular large radiograph archives. The methodology is based on local patch representation of the image content, using a "bag of visual words" approach. We explore the effects of various parameters on system performance, and show best results using dense sampling of simple features with spatial content, and a nonlinear kernel-based support vector machine (SVM) classifier. In a recent international competition the system was ranked first in discriminating orientation and body regions in X-ray images. In addition to organ-level discrimination, we show an application to pathology-level categorization of chest X-ray data, the most popular examination in radiology. The system discriminates between healthy and pathological cases, and is also shown to successfully identify specific pathologies in a set of chest radiographs taken from a routine hospital examination. This is a first step towards similarity-based categorization, which has a major clinical implications for computer-assisted diagnostics.
Uri Avni, Hayit Greenspan, Eli Konen, Michal Sharon, Jacob Goldberger
IEEE Trans. Medical Imaging2
2011 A Supervised Framework for the Registration and Segmentation of White Matter Fiber Tracts
abstract
A supervised framework is presented for the automatic registration and segmentation of white matter (WM) tractographies extracted from brain DT-MRI. The framework relies on the direct registration between the fibers, without requiring any intensity-based registration as preprocessing. An affine transform is recovered together with a set of segmented fibers. A recently introduced probabilistic boosting tree classifier is used in a segmentation refinement step to improve the precision of the target tract segmentation. The proposed method compares favorably with a state-of-the-art intensity-based algorithm for affine registration of DTI tractographies. Segmentation results for 12 major WM tracts are demonstrated. Quantitative results are also provided for the segmentation of a particularly difficult case, the optic radiation tract. An average precision of 80% and recall of 55% were obtained for the optimal configuration of the presented method.
Arnaldo Mayer, Gali Zimmerman-Moreno, Ran Shadmi, Amit Batikoff, Hayit Greenspan
IEEE Trans. Medical Imaging5
2010 Shape-based similarity retrieval of Doppler images for clinical decision support
abstract
Flow Doppler imaging has become an integral part of an echocardiographic exam. Automated interpretation of flow doppler imaging has so far been restricted to obtaining hemodynamic information from velocity-time profiles depicted in these images. In this paper we exploit the shape patterns in Doppler images to infer the similarity in valvular disease labels for purposes of automated clinical decision support. Specifically, we model the similarity in appearance of Doppler images from the same disease class as a constrained non-rigid translation transform of the velocity envelopes embedded in these images. The shape similarity between two Doppler images is then judged by recovering the alignment transform using a variant of dynamic shape warping. Results of similarity retrieval of doppler images for cardiac decision support on a large database of images are presented.
Tanveer F. Syeda-Mahmood, Pavan Turaga, David Beymer, Fei Wang 0002, Arnon Amir, Hayit Greenspan, Kilian M. Pohl
CVPR6
2010 An agglomerative segmentation framework for non-convex regions within uterine cervix images
Shiri Gordon, Hayit Greenspan
Image Vis. Comput.2
2010 Automated and Interactive Lesion Detection and Segmentation in Uterine Cervix Images
abstract
This paper presents a procedure for automatic extraction and segmentation of a class-specific object (or region) by learning class-specific boundaries. We describe and evaluate the method with a specific focus on the detection of lesion regions in uterine cervix images. The watershed segmentation map of the input image is modeled using a Markov random field (MRF) in which watershed regions correspond to binary random variables indicating whether the region is part of the lesion tissue or not. The local pairwise factors on the arcs of the watershed map indicate whether the arc is part of the object boundary. The factors are based on supervised learning of a visual word distribution. The final lesion region segmentation is obtained using a loopy belief propagation applied to the watershed arc-level MRF. Experimental results on real data show state-of-the-art segmentation results on this very challenging task that, if necessary, can be interactively enhanced.
Amir Alush, Hayit Greenspan, Jacob Goldberger
IEEE Trans. Medical Imaging2
2010 Co-registration of White Matter Tractographies by Adaptive-Mean-Shift and Gaussian Mixture Modeling
abstract
In this paper, we present a robust approach to the registration of white matter tractographies extracted from diffusion tensor-magnetic resonance imaging scans. The fibers are projected into a high dimensional feature space based on the sequence of their 3-D coordinates. Adaptive mean-shift clustering is applied to extract a compact set of representative fiber-modes (FM). Each FM is assigned to a multivariate Gaussian distribution according to its population thereby leading to a Gaussian mixture model (GMM) representation for the entire set of fibers. The registration between two fiber sets is treated as the alignment of two GMMs and is performed by maximizing their correlation ratio. A nine-parameters affine transform is recovered and eventually refined to a twelve-parameters affine transform using an innovative mean-shift based registration refinement scheme presented in this paper. The validation of the algorithm on synthetic intrasubject data demonstrates its robustness to interrupted and deviating fiber artifacts as well as outliers. Using real intrasubject data, a comparison is conducted to other intensity based and fiber-based registration algorithms, demonstrating competitive results. An option for tracking-in-time, on specific white matter fiber tracts, is also demonstrated on the real data.
Orly Zvitia, Arnaldo Mayer, Ran Shadmi, Shmuel Miron, Hayit Greenspan
IEEE Trans. Medical Imaging5
2009 Super-Resolution in Medical Imaging
abstract
This paper provides an overview on super-resolution (SR) research in medical imaging applications. Many imaging modalities exist. Some provide anatomical information and reveal information about the structure of the human body, and others provide functional information, locations of activity for specific activities and specified tasks. Each imaging system has a characteristic resolution, which is determined based on physical constraints of the system detectors that are in turn tuned to signal-to-noise and timing considerations. A common goal across systems is to increase the resolution, and as much as possible achieve true isotropic 3-D imaging. SR technology can serve to advance this goal. Research on SR in key medical imaging modalities, including MRI, fMRI and PET, has started to emerge in recent years and is reviewed herein. The algorithms used are mostly based on standard SR algorithms. Results demonstrate the potential in introducing SR techniques into practical medical applications.
Hayit Greenspan
Comput. J.1
2009 Automatic Detection of Anatomical Landmarks in Uterine Cervix Images
abstract
The work focuses on a unique medical repository of digital cervicographic images ("Cervigrams") collected by the National Cancer Institute (NCI) in longitudinal multiyear studies. NCI, together with the National Library of Medicine (NLM), is developing a unique web-accessible database of the digitized cervix images to study the evolution of lesions related to cervical cancer. Tools are needed for automated analysis of the cervigram content to support cancer research. We present a multistage scheme for segmenting and labeling regions of anatomical interest within the cervigrams. In particular, we focus on the extraction of the cervix region and fine detection of the cervix boundary; specular reflection is eliminated as an important preprocessing step; in addition, the entrance to the endocervical canal (the "os"), is detected. Segmentation results are evaluated on three image sets of cervigrams that were manually labeled by NCI experts.
Hayit Greenspan, Shiri Gordon, Gali Zimmerman-Moreno, Shelly Lotenberg, Jose Jeronimo, Sameer K. Antani, L. Rodney Long
IEEE Trans. Medical Imaging1
2009 An Adaptive Mean-Shift Framework for MRI Brain Segmentation
abstract
An automated scheme for magnetic resonance imaging (MRI) brain segmentation is proposed. An adaptive mean-shift methodology is utilized in order to classify brain voxels into one of three main tissue types: gray matter, white matter, and Cerebro-spinal fluid. The MRI image space is represented by a high-dimensional feature space that includes multimodal intensity features as well as spatial features. An adaptive mean-shift algorithm clusters the joint spatial-intensity feature space, thus extracting a representative set of high-density points within the feature space, otherwise known as modes. Tissue segmentation is obtained by a follow-up phase of intensity-based mode clustering into the three tissue categories. By its nonparametric nature, adaptive mean-shift can deal successfully with nonconvex clusters and produce convergence modes that are better candidates for intensity based classification than the initial voxels. The proposed method is validated on 3-D single and multimodal datasets, for both simulated and real MRI data. It is shown to perform well in comparison to other state-of-the-art methods without the use of a preregistered statistical brain atlas.
Arnaldo Mayer, Hayit Greenspan
IEEE Trans. Medical Imaging2
2008 Simplifying Mixture Models Using the Unscented Transform
abstract
Mixture of Gaussians (MoG) model is a useful tool in statistical learning. In many learning processes that are based on mixture models, computational requirements are very demanding due to the large number of components involved in the model. We propose a novel algorithm for learning a simplified representation of a Gaussian mixture, that is based on the Unscented Transform which was introduced for filtering nonlinear dynamical systems. The superiority of the proposed method is validated on both simulation experiments and categorization of a real image database. The proposed categorization methodology is based on modeling each image using a Gaussian mixture model. A category model is obtained by learning a simplified mixture model from all the images in the category.
Jacob Goldberger, Hayit Greenspan, Jeremie Dreyfuss
IEEE Trans. Pattern Anal. Mach. Intell.2
2007 An Optimal Reduced Representation of a MoG with Applicatios to Medical Image Database Classification
abstract
This work focuses on a general framework for image categorization, classification and retrieval that may be appropriate for medical image archives. The proposed methodology is comprised of a continuous and probabilistic image representation scheme using Gaussian mixture modeling (MoG) along with information-theoretic image matching measures (KL). A category model is obtained by learning a reduced model from all the images in the category. We propose a novel algorithm for learning a reduced representation of a MoG, that is based on the unscented-transform. The superiority of the proposed method is validated on both simulation experiments and categorization of a real medical image database.
Jacob Goldberger, Hayit Greenspan, Jeremie Dreyfuss
CVPR2
2007 Combining Region and Edge Cues for Image Segmentation in a Probabilistic Gaussian Mixture Framework
abstract
In this paper we propose a new segmentation algorithm which combines patch-based information with edge cues under a probabilistic framework. We use a mixture of multiple Gaussians for building the statistical model with color and spatial features, and we incorporate edge information based on texture, color and brightness differences into the EM algorithm. We evaluate our results qualitatively and quantitatively on a large data-set of natural images and compare our results to other state-of-the-art methods.
Omer Rotem, Hayit Greenspan, Jacob Goldberger
CVPR2
2007 Can Born Approximate the Unborn? A New Validity Criterion for the Born Approximation in Microscopic Imaging
abstract
The Nomarski differential interference contrast (DIC) microscopy is of widespread use for observing live biological specimens. In fertility clinics the DIC microscope is used for evaluating human embryo cells. An image formation model for DIC imaging is needed for reconstruction and quantification of the visualized specimens. This calls for a complicated analysis of the interaction of light waves with biological matter. Most works express the solution via the first Born approximation, yet a theoretical bound is known that limits the validity of such approximation to very small objects. We show in this work that the theoretical bound is not directly relevant to microscopic imaging and is far too limiting. We derive a more realistic bound and show that it may justify in many cases the use of the Born approximation in biological cell microscopic imaging. It also provides limits on the validity of the Born expansion that several works violate.
Sigal Trattner, Micha Feigin, Hayit Greenspan, Nir A. Sochen
ICCV3
2007 Medical Image Categorization and Retrieval for PACS Using the GMM-KL Framework
abstract
This paper presents an image representation and matching framework for image categorization in medical image archives. Categorization enables one to determine automatically, based on the image content, the examined body region and imaging modality. It is a basic step in content-based image retrieval (CBIR) systems, the goal of which is to augment text-based search with visual information analysis. CBIR systems are currently being integrated with picture archiving and communication systems for increasing the overall search capabilities and tools available to radiologists. The proposed methodology is comprised of a continuous and probabilistic image representation scheme using Gaussian mixture modeling (GMM) along with information-theoretic image matching via the Kullback-Leibler (KL) measure. The GMM-KL framework is used for matching and categorizing X-ray images by body regions. A multidimensional feature space is used to represent the image input, including intensity, texture, and spatial information. Unsupervised clustering via the GMM is used to extract coherent regions in feature space that are then used in the matching process. A dominant characteristic of the radiological images is their poor contrast and large intensity variations. This presents a challenge to matching among the images, and is handled via an illumination-invariant representation. The GMM-KL framework is evaluated for image categorization and image retrieval on a dataset of 1500 radiological images. A classification rate of 97.5% was achieved. The classification results compare favorably with reported global and local representation schemes. Precision versus recall curves indicate a strong retrieval result as compared with other state-of-the-art retrieval techniques. Finally, category models are learned and results are presented for comparing images to learned category models.
Hayit Greenspan, Adi Pinhas
IEEE Trans. Inf. Technol. Biomed.1
2006 Context-Based Segmentation of Image Sequences
abstract
We describe an algorithm for context-based segmentation of visual data. New frames in an image sequence (video) are segmented based on the prior segmentation of earlier frames in the sequence. The segmentation is performed by adapting a probabilistic model learned on previous frames, according to the content of the new frame. We utilize the maximum a posteriori version of the EM algorithm to segment the new image. The Gaussian mixture distribution that is used to model the current frame is transformed into a conjugate-prior distribution for the parametric model describing the segmentation of the new frame. This semisupervised method improves the segmentation quality and consistency and enables a propagation of segments along the segmented images. The performance of the proposed approach is illustrated on both simulated and real image data.
Jacob Goldberger, Hayit Greenspan
IEEE Trans. Pattern Anal. Mach. Intell.2
2006 Unsupervised image-set clustering using an information theoretic framework
abstract
In this paper, we combine discrete and continuous image models with information-theoretic-based criteria for unsupervised hierarchical image-set clustering. The continuous image modeling is based on mixture of Gaussian densities. The unsupervised image-set clustering is based on a generalized version of a recently introduced information-theoretic principle, the information bottleneck principle. Images are clustered such that the mutual information between the clusters and the image content is maximally preserved. Experimental results demonstrate the performance of the proposed framework for image clustering on a large image set. Information theoretic tools are used to evaluate cluster quality. Particular emphasis is placed on the application of the clustering for efficient image search and retrieval.
Jacob Goldberger, Shiri Gordon, Hayit Greenspan
IEEE Trans. Image Process.3
2006 Constrained Gaussian mixture model framework for automatic segmentation of MR brain images
abstract
An automated algorithm for tissue segmentation of noisy, low-contrast magnetic resonance (MR) images of the brain is presented. A mixture model composed of a large number of Gaussians is used to represent the brain image. Each tissue is represented by a large number of Gaussian components to capture the complex tissue spatial layout. The intensity of a tissue is considered a global feature and is incorporated into the model through tying of all the related Gaussian parameters. The expectation-maximization (EM) algorithm is utilized to learn the parameter-tied, constrained Gaussian mixture model. An elaborate initialization scheme is suggested to link the set of Gaussians per tissue type, such that each Gaussian in the set has similar intensity characteristics with minimal overlapping spatial supports. Segmentation of the brain image is achieved by the affiliation of each voxel to the component of the model that maximized the a posteriori probability. The presented algorithm is used to segment three-dimensional, T1-weighted, simulated and real MR images of the brain into three different tissues, under varying noise conditions. Results are compared with state-of-the-art algorithms in the literature. The algorithm does not use an atlas for initialization or parameter learning. Registration processes are therefore not required and the applicability of the framework can be extended to diseased brains and neonatal brains.
Hayit Greenspan, Amit Ruf, Jacob Goldberger
IEEE Trans. Medical Imaging1
2005 Tissue Classification of Noisy MR Brain Images Using Constrained GMM
Amit Ruf, Hayit Greenspan, Jacob Goldberger
MICCAI (2)2
2004 Image Segmentation of Uterine Cervix Images for Indexing in PACS
abstract
The National Cancer Institute has collected a large database of digitized 35 mm slides of the uterine cervix, the idea being to build a system enabling to study the evolution of lesions related to cervical cancer. In taking the first few steps towards this goal, the objective of this work is to develop and evaluate methodologies required for visual-based (i.e. content-based) indexing and retrieval that substantially improve information management of such a database. In this paper we model the properties of three tissue types using color and texture features, and use these models for image segmentation. Statistical modeling and segmentation tools are used for the task.
Shiri Gordon, Gali Zimmerman-Moreno, Hayit Greenspan
CBMS3
2004 Context-dependent segmentation and matching in image databases
Hayit Greenspan, Guy Dvir, Yossi Rubner
Comput. Vis. Image Underst.1
2004 Probabilistic Space-Time Video Modeling via Piecewise GMM
abstract
In this paper, we describe a statistical video representation and modeling scheme. Video representation schemes are needed to segment a video stream into meaningful video-objects, useful for later indexing and retrieval applications. In the proposed methodology, unsupervised clustering via Gaussian mixture modeling extracts coherent space-time regions in feature space, and corresponding coherent segments (video-regions) in the video content. A key feature of the system is the analysis of video input as a single entity as opposed to a sequence of separate frames. Space and time are treated uniformly. The probabilistic space-time video representation scheme is extended to a piecewise GMM framework in which a succession of GMMs are extracted for the video sequence, instead of a single global model for the entire sequence. The piecewise GMM framework allows for the analysis of extended video sequences and the description of nonlinear, nonconvex motion patterns. The extracted space-time regions allow for the detection and recognition of video events. Results of segmenting video content into static versus dynamic video regions and video content editing are presented.
Hayit Greenspan, Jacob Goldberger, Arnaldo Mayer
IEEE Trans. Pattern Anal. Mach. Intell.1
2004 Automatic identification of bacterial types using statistical imaging methods
abstract
The objective of the current study is to develop an automatic tool to identify microbiological data types using computer-vision and statistical modeling techniques. Bacteriophage (phage) typing methods are used to identify and extract representative profiles of bacterial types out of species such as the Staphylococcus aureus. Current systems rely on the subjective reading of profiles by a human expert. This process is time-consuming and prone to errors, especially as technology is enabling the increase in the number of phages used for typing. The statistical methodology presented in this work, provides for an automated, objective and robust analysis of visual data, along with the ability to cope with increasing data volumes.
Sigal Trattner, Hayit Greenspan, Gabi Tepper, Shimon Abboud
IEEE Trans. Medical Imaging2
2003 An Efficient Image Similarity Measure Based on Approximations of KL-Divergence Between Two Gaussian Mixtures
abstract
We present two new methods for approximating the Kullback-Liebler (KL) divergence between two mixtures of Gaussians. The first method is based on matching between the Gaussian elements of the two Gaussian mixture densities. The second method is based on the unscented transform. The proposed methods are utilized for image retrieval tasks. Continuous probabilistic image modeling based on mixtures of Gaussians together with KL measure for image similarity, can be used for image retrieval tasks with remarkable performance. The efficiency and the performance of the KL approximation methods proposed are demonstrated on both simulated data and real image data sets. The experimental results indicate that our proposed approximations outperform previously suggested methods.
Jacob Goldberger, Shiri Gordon, Hayit Greenspan
ICCV3
2003 Applying the Information Bottleneck Principle to Unsupervised Clustering of Discrete and Continuous Image Representations
abstract
We present a method for unsupervised clustering of image databases. The method is based on a recently introduced information-theoretic principle, the information bottleneck (IB) principle. Image archives are clustered such that the mutual information between the clusters and the image content is maximally preserved. The IB principle is applied to both discrete and continuous image representations, using discrete image histograms and probabilistic continuous image modeling based on mixture of Gaussian densities, respectively. Experimental results demonstrate the performance of the proposed method for image clustering on a large image database. Several clustering algorithms derived from the IB principle are explored and compared.
Shiri Gordon, Hayit Greenspan, Jacob Goldberger
ICCV2
2002 A Probabilistic Framework for Spatio-Temporal Video Representation & Indexing
Hayit Greenspan, Jacob Goldberger, Arnaldo Mayer
ECCV (4)1
2002 Blobworld: Image Segmentation Using Expectation-Maximization and Its Application to Image Querying
abstract
Retrieving images from large and varied collections using image content as a key is a challenging and important problem. We present a new image representation that provides a transformation from the raw pixel data to a small set of image regions that are coherent in color and texture. This "Blobworld" representation is created by clustering pixels in a joint color-texture-position feature space. The segmentation algorithm is fully automatic and has been run on a collection of 10,000 natural images. We describe a system that uses the Blobworld representation to retrieve images from this collection. An important aspect of the system is that the user is allowed to view the internal representation of the submitted image and the query results. Similar systems do not offer the user this view into the workings of the system; consequently, query results from these systems can be inexplicable, despite the availability of knobs for adjusting the similarity metrics. By finding image regions that roughly correspond to objects, we allow querying at the level of objects rather than global image properties. We present results indicating that querying for images using Blobworld produces higher precision than does querying using color and texture histograms of the entire image in cases where the image contains distinctive objects.
Chad Carson, Serge J. Belongie, Hayit Greenspan, Jitendra Malik
IEEE Trans. Pattern Anal. Mach. Intell.3
2001 MRI Inter-slice Reconstruction Using Super-Resolution
Hayit Greenspan, Sharon Peled, Gal Oz, Nahum Kiryati
MICCAI1
2001 A Continuous Probabilistic Framework for Image Matching
Hayit Greenspan, Jacob Goldberger, Lenny Ridel
Comput. Vis. Image Underst.1
2001 Mixture model for face-color modeling and segmentation
Hayit Greenspan, Jacob Goldberger, Itay Eshet
Pattern Recognit. Lett.1
2001 Evaluation of Center-line Extraction Algorithms in Quantitative Coronary Angiography
abstract
Objective testing of centerline extraction accuracy in quantitative coronary angiography (QCA) algorithms is a very difficult task. Standard tools for this task are not yet available. We present a simulation tool that generates synthetic angiographic images of a single coronary artery with predetermined centerline and diameter function. This simulation tool was used creating a library of images for the objective comparison and evaluation of QCA algorithms. This technique also provides the means for understanding the relationship between the algorithms' performance and limitations and the vessel's geometrical parameters. In this paper, two algorithms are evaluated and the results are presented.
Hayit Greenspan, Moshe Laifenfeld, Shmuel Einav, Ofer Barnea
IEEE Trans. Medical Imaging1
2000 Image enhancement by nonlinear extrapolation in frequency space
abstract
A technique for enhancing the perceptual sharpness of an image is described. The enhancement algorithm augments the frequency content of the image using shape-invariant properties of edges across scale by using a nonlinearity that generates phase coherent higher harmonics. The procedure utilizes the Laplacian transform and the Laplacian pyramid image representation. Results are presented depicting the power-spectra augmentation and the visual enhancement of several images. Simplicity of computations and ease of implementation allow for real-time applications such as high-definition television (HDTV).
Hayit Greenspan, Charles H. Anderson, Sofia Akber
IEEE Trans. Image Process.1
1998 Color- and Texture-based Image Segmentation Using the Expectation-Maximization Algorithm and its Application to Content-Based Image Retrieval
abstract
Retrieving images from large and varied collections using image content as a key is a challenging and important problem. In this paper we present a new image representation which provides a transformation from the raw pixel data to a small set of image regions which are coherent in color and texture space. This so-called "blobworld" representation is based on segmentation using the expectation-maximization algorithm on combined color and texture features. The texture features we use for the segmentation arise from a new approach to texture description and scale selection. We describe a system that uses the blobworld representation to retrieve images. An important and unique aspect of the system is that, in the context of similarity-based querying, the user is allowed to view the internal representation of the submitted image and the query results. Similar systems do not offer the user this view into the workings of the system; consequently, the outcome of many queries on these systems can be quite inexplicable, despite the availability of knobs for adjusting the similarity metric.
Serge J. Belongie, Chad Carson, Hayit Greenspan, Jitendra Malik
ICCV3
1996 Finding objects in image databases by grouping
abstract
Retrieving images from very large collections, using image content as a key, is becoming an important problem. Finding objects in image databases is a big challenge in the field. The paper describes our approach to object recognition, which is distinguished by: a rich involvement of early visual primitives, including color and texture; hierarchical grouping and learning strategies in the classification process; the ability to deal with rather general objects in uncontrolled configurations and contexts. We illustrate these properties with three case studies: one demonstrating the use of color and texture descriptors; one learning scenery concepts using grouped features; and one demonstrating a possible application domain in detecting naked people in a scene.
Jitendra Malik, David A. Forsyth, Margaret M. Fleck, Hayit Greenspan, Thomas K. Leung, Chad Carson, Serge J. Belongie, Christoph Bregler
ICIP (2)4
1995 Nonlinear edge enhancement
abstract
The article work extends a nonlinear, image enhancement scheme proposed by Greenspan and Anderson (see Proceedings of SPIE on Image and Video Processing II, vol.2182, p 2-13, 1993). We concentrate on parameter sensitivity in a global scheme, as well as motivate and discuss adaptive local parametrization in the enhancement algorithm. The enhancement scheme uses nonlinear filtering to augment the frequency spectrum of a blurred input (creating new high-spatial frequencies). As a result of the enhancement, images are created with higher resolution than the sampling rate would allow. This property is highly valuable in application domains which require limited bandwidth to represent or transmit images, including the HDTV and videophone markets.
Hayit Greenspan, Sofia Akber
ICIP1
1994 Overcomplete steerable pyramid filters and rotation invariance
abstract
A given (overcomplete) discrete oriented pyramid may be converted into a steerable pyramid by interpolation. We present a technique for deriving the optimal interpolation functions (otherwise called 'steering coefficients'). The proposed scheme is demonstrated on a computationally efficient oriented pyramid, which is a variation on the Burt and Adelson (1983) pyramid. We apply the generated steerable pyramid to orientation-invariant texture analysis in order to demonstrate its excellent rotational isotropy. High classification rates and precise rotation identification are demonstrated.>
Hayit Greenspan, Serge J. Belongie, Rodney M. Goodman, Pietro Perona, Subrata Rakshit, Charles H. Anderson
CVPR1
1994 Rotation invariant texture recognition using a steerable pyramid
abstract
A rotation-invariant texture recognition system is presented. A steerable oriented pyramid is used to extract representative features for the input textures. The steerability of the filter set allows a shift to an invariant representation via a DFT-encoding step. Supervised classification follows. State-of-the-art recognition results are presented on a 30 texture database with a comparison across the performance of the k-NN, backpropagation and rule-based classifiers. In addition, high accuracy estimation of the input rotation angle is demonstrated.
Hayit Greenspan, Serge J. Belongie, Rodney M. Goodman, Pietro Perona
ICPR (2)1
1994 Learning Texture Discrimination Rules in a Multiresolution System
abstract
We describe a texture analysis system in which informative discrimination rules are learned from a multiresolution representation of time textured input. The system incorporates unsupervised and supervised learning via statistical machine learning and rule-based neural networks, respectively. The textured input is represented in the frequency-orientation space via a log-Gabor pyramidal decomposition. In the unsupervised learning stage a statistical clustering scheme is used for the quantization of the feature-vector attributes. A supervised stage follows in which labeling of the textured map is achieved using a rule-based network. Simulation results for the texture classification task are given. An application of the system to real-world problems is demonstrated.>
Hayit Greenspan, Rodney M. Goodman, Rama Chellappa, Charles H. Anderson
IEEE Trans. Pattern Anal. Mach. Intell.1
1993 Learning in Computer Vision and Image Understanding
Hayit Greenspan
NIPS1
1992 Remote Sensing Image Analysis via a Texture Classification Neural Network
Hayit Greenspan, Rodney M. Goodman
NIPS1
1992 Projection-Based Approach to Image Analysis: Pattern Recognition and Representation in the Position-Orientation Space
abstract
A method for image analysis, based on the formalism of functional analysis is proposed. This approach, which is employed for pattern recognition in the combined position-orientation space, is motivated by a variety of neurophysiological findings that emphasize the importance of the orientation feature in visual image processing and analysis. The approach is applied to the so-called Glass patterns, which are special cases of images characterized uniquely by their orientational feature of local correlations between pairs of corresponding dots. The approach can be of interest in the analysis of optical flow.>
Hayit Greenspan, Moshe Porat, Yehoshua Y. Zeevi
IEEE Trans. Pattern Anal. Mach. Intell.1
1991 Combined Neural Network and Rule-Based Framework for Probabilistic Pattern Recognition and Discovery
Hayit Greenspan, Rodney M. Goodman, Rama Chellappa
NIPS1
1988 Glass pattern recognition with neural-networks
Hayit Greenspan, M. Fleisher, Moshe Porat, Yehoshua Y. Zeevi
Neural Networks1