Graph-structured data plays a pivotal role in modeling complex relationships. However, real-world graphs are often incomplete due to data collection and observational constraints, severely limiting the effectiveness of modern graph learning pipelines. While existing Graph Data Augmentation (GDA) methods attempt to refine graph structures for improved downstream performance, they are typically label-dependent, computationally expensive, and inherently transductive, limiting their applicability in practical scenarios. In this work, we present a novel feature-centric graph data augmentation framework that bypasses explicit structure modeling by operating directly in the embedding space. Through a self-supervised inverse masking process, our method captures latent ties between observed and complete graphs, enabling recovery of unobserved structural signals through refined node representations. To enhance robustness under noisy and sparse supervision, we introduce a message regularizer and a bootstrap strategy for effective training and generalization. Evaluated on ten graph datasets spanning multiple domains, our approach, SelfAug, consistently outperforms state-of-the-art methods in both accuracy and efficiency across inductive and cold-start settings, highlighting its potential as a scalable and generalizable solution for real-world graph learning scenarios.

Self-supervised learning (SSL) has shown great promise in graph representation learning. However, most existing graph SSL methods are developed and evaluated under a single-dataset setting, leaving their cross-dataset transferability largely unexplored and limiting their ability to leverage knowledge transfer and large-scale pretraining, factors that are critical for developing generalized intelligence beyond fitting training data. To address this gap and advance foundation model research for graphs, we present GSTBench, the first systematic benchmark for evaluating the transferability of graph SSL methods. We conduct large-scale pretraining on ogbn-papers100M and evaluate five representative SSL methods across a diverse set of target graphs. Our standardized experimental setup decouples confounding factors such as model architecture, dataset characteristics, and adaptation protocols, enabling rigorous comparisons focused solely on pretraining objectives. Surprisingly, we observe that most graph SSL methods struggle to generalize, with some performing worse than random initialization. In contrast, GraphMAE, a masked autoencoder approach, consistently improves transfer performance. We analyze the underlying factors that drive these differences and offer insights to guide future research on transferable graph SSL, laying a solid foundation for the ''pretrain-then-transfer'' paradigm in graph learning. Our code is available at https://github.com/SongYYYY/GSTBench.

Link Prediction (LP) is a critical task in graph machine learning. While Graph Neural Networks (GNNs) have significantly advanced LP performance recently, existing methods face key challenges including limited supervision from sparse connectivity, sensitivity to initialization, and poor generalization under distribution shifts. We explore pretraining as a solution to address these challenges. Unlike node classification, LP is inherently a pairwise task, which requires the integration of both node- and edge-level information. In this work, we present the first systematic study on the transferability of these distinct modules and propose a late fusion strategy to effectively combine their outputs for improved performance. To handle the diversity of pretraining data and avoid negative transfer, we introduce a Mixture-of-Experts (MoE) framework that captures distinct patterns in separate experts, facilitating seamless application of the pretrained model on diverse downstream datasets. For fast adaptation, we develop a parameter-efficient tuning strategy that allows the pretrained model to adapt to unseen datasets with minimal computational overhead. Experiments on 16 datasets across two domains demonstrate the effectiveness of our approach, achieving state-of-the-art performance on low-resource link prediction while obtaining competitive results compared to end-to-end trained methods, with over 10,000x lower computational overhead.

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a cornerstone in Graph Machine Learning (Graph ML), facilitating the representation and processing of graphs. Recently, LLMs have demonstrated unprecedented capabilities in language tasks and are widely adopted in a variety of applications, such as computer vision and recommender systems. This remarkable success has also attracted interest in applying LLMs to the graph domain. Increasing efforts have been made to explore the potential of LLMs in advancing Graph ML’s generalization, transferability, and few-shot learning ability. Meanwhile, graphs, especially knowledge graphs, are rich in reliable factual knowledge, which can be utilized to enhance the reasoning capabilities of LLMs and potentially alleviate their limitations, such as hallucinations and the lack of explainability. Given the rapid progress of this research direction, a systematic review summarizing the latest advancements for Graph ML in the era of LLMs is necessary to provide an in-depth understanding to researchers and practitioners. Therefore, in this survey, we first review the recent developments in Graph ML. We then explore how LLMs can be utilized to enhance the quality of graph features, alleviate the reliance on labeled data, and address challenges such as graph Heterophily and Out-of-Distribution (OOD) generalization. Afterward, we delve into how graphs can enhance LLMs, highlighting their abilities to enhance LLM pre-training and inference. Furthermore, we investigate various applications and discuss the potential future directions in this promising field.

Given the ubiquity of graph data and its applications in diverse domains, building a Graph Foundation Model (GFM) that can work well across different graphs and tasks with a unified backbone has recently garnered significant interests. A major obstacle to achieving this goal stems from the fact that graphs from different domains often exhibit diverse node features. Inspired by multi-modal models that align different modalities with natural language, the text has recently been adopted to provide a unified feature space for diverse graphs. Despite the great potential of these text-space GFMs, current research in this field is hampered by two problems. First, the absence of a comprehensive benchmark with unified problem settings hinders a clear understanding of the comparative effectiveness and practical value of different text-space GFMs. Second, there is a lack of sufficient datasets to thoroughly explore the methods' full potential and verify their effectiveness across diverse settings. To address these issues, we conduct a comprehensive benchmark providing novel text-space datasets and comprehensive evaluation under unified problem settings. Empirical results provide new insights and inspire future research directions. Our code and data are publicly available from https://github.com/CurryTang/TSGFM.

Adapters, a plug-in neural network module with some tunable parameters, have emerged as a parameter-efficient transfer learning technique for adapting pre-trained models to downstream tasks, especially for natural language processing (NLP) and computer vision (CV) fields. Meanwhile, learning recommendation models directly from raw item modality features --- e.g., texts of NLP and images of CV --- can enable effective and transferable recommender systems (called TransRec). In view of this, a natural question arises:can adapter-based learning techniques achieve parameter-efficient TransRec with good performance?

Recommendation models that utilize unique identities (IDs for short) to represent distinct users and items have been state-of-the-art (SOTA) and dominated the recommender systems (RS) literature for over a decade. Meanwhile, the pre-trained modality encoders, such as BERT [9] and Vision Transformer [11], have become increasingly powerful in modeling the raw modality features of an item, such as text and images. Given this, a natural question arises: can a purely modality-based recommendation model (MoRec) outperforms or matches a pure ID-based model (IDRec) by replacing the itemID embedding with a SOTA modality encoder? In fact, this question was answered ten years ago when IDRec beats MoRec by a strong margin in both recommendation accuracy and efficiency.